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Showing :
copywriteR
•
reset
0
votes
2
replies
560
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
8 months ago
fer_talavera
• 0
0
votes
1
reply
716
views
CopywriteR output
CopywriteR
updated 8 months ago by
fer_talavera
• 0 • written 3.2 years ago by
Joshua
• 0
2
votes
4
replies
1.1k
views
CopywriteR job runs out of memory
copywriter
cnv
updated 4.7 years ago by
oscarkrijgsman
▴ 20 • written 4.7 years ago by
Ram
▴ 220
0
votes
1
reply
1.1k
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 6.3 years ago by
t.kuilman
▴ 170 • written 6.3 years ago by
magdaaverte
• 0
3
votes
12
replies
2.4k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
TriS
▴ 200
1
vote
2
replies
2.0k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
genomic8328
▴ 10
0
votes
1
reply
1.3k
views
Problems with CopywriteR
copywriter
updated 7.8 years ago by
t.kuilman
▴ 170 • written 7.8 years ago by
filipzembol
• 0
0
votes
1
reply
1.8k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 8.4 years ago by
t.kuilman
▴ 170 • written 8.4 years ago by
ahinsahr11
• 0
0
votes
3
replies
1.6k
views
CopywriteR error: "Error in .Method"
CopywriteR
8.5 years ago
Tom
▴ 10
1
vote
3
replies
1.6k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 8.6 years ago by
t.kuilman
▴ 170 • written 8.6 years ago by
thestaroceanster
• 0
3
votes
3
replies
4.2k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 8.8 years ago by
t.kuilman
▴ 170 • written 8.8 years ago by
jcarter
• 0
2
votes
4
replies
2.6k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 8.8 years ago by
t.kuilman
▴ 170 • written 8.8 years ago by
jcarter
• 0
1
vote
2
replies
1.5k
views
Copywriter output looks strange
copywriter
8.8 years ago
MatthewGField
▴ 10
2
votes
9
replies
2.9k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 8.8 years ago by
t.kuilman
▴ 170 • written 8.9 years ago by
smcnulty
• 0
0
votes
7
replies
2.3k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 8.8 years ago by
t.kuilman
▴ 170 • written 8.9 years ago by
smcnulty
• 0
0
votes
1
reply
1.5k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 8.8 years ago by
t.kuilman
▴ 170 • written 8.8 years ago by
sshung
• 0
2
votes
1
reply
1.4k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 9.0 years ago by
t.kuilman
▴ 170 • written 9.0 years ago by
Felix
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
by
O'Brien
• 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts
by
O'Brien
• 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown
by
neighsanlo
• 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
freemanmclaughlin9969289
• 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc
by
Nan
• 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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