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Showing :
copywriteR
•
reset
0
votes
2
replies
527
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
7 months ago
fer_talavera
• 0
0
votes
1
reply
699
views
CopywriteR output
CopywriteR
updated 7 months ago by
fer_talavera
• 0 • written 3.1 years ago by
Joshua
• 0
2
votes
4
replies
1.1k
views
CopywriteR job runs out of memory
copywriter
cnv
updated 4.6 years ago by
oscarkrijgsman
▴ 20 • written 4.6 years ago by
Ram
▴ 220
0
votes
1
reply
1.1k
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 6.2 years ago by
t.kuilman
▴ 170 • written 6.2 years ago by
magdaaverte
• 0
3
votes
12
replies
2.3k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 6.6 years ago by
Michael Lawrence
★ 11k • written 6.6 years ago by
TriS
▴ 200
1
vote
2
replies
1.9k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
genomic8328
▴ 10
0
votes
1
reply
1.3k
views
Problems with CopywriteR
copywriter
updated 7.7 years ago by
t.kuilman
▴ 170 • written 7.7 years ago by
filipzembol
• 0
0
votes
1
reply
1.8k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 8.3 years ago by
t.kuilman
▴ 170 • written 8.3 years ago by
ahinsahr11
• 0
0
votes
3
replies
1.6k
views
CopywriteR error: "Error in .Method"
CopywriteR
8.4 years ago
Tom
▴ 10
1
vote
3
replies
1.5k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 8.5 years ago by
t.kuilman
▴ 170 • written 8.5 years ago by
thestaroceanster
• 0
3
votes
3
replies
4.1k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 8.7 years ago by
t.kuilman
▴ 170 • written 8.7 years ago by
jcarter
• 0
2
votes
4
replies
2.6k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 8.7 years ago by
t.kuilman
▴ 170 • written 8.7 years ago by
jcarter
• 0
1
vote
2
replies
1.4k
views
Copywriter output looks strange
copywriter
8.7 years ago
MatthewGField
▴ 10
2
votes
9
replies
2.8k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 8.7 years ago by
t.kuilman
▴ 170 • written 8.8 years ago by
smcnulty
• 0
0
votes
7
replies
2.2k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 8.7 years ago by
t.kuilman
▴ 170 • written 8.8 years ago by
smcnulty
• 0
0
votes
1
reply
1.5k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 8.8 years ago by
t.kuilman
▴ 170 • written 8.8 years ago by
sshung
• 0
2
votes
1
reply
1.4k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 8.9 years ago by
t.kuilman
▴ 170 • written 8.9 years ago by
Felix
• 0
17 results • Page
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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
rcreed
• 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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