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copywriteR
•
reset
0
votes
2
replies
869
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
21 months ago
fer_talavera
• 0
0
votes
1
reply
1.0k
views
CopywriteR output
CopywriteR
updated 21 months ago by
fer_talavera
• 0 • written 4.2 years ago by
Joshua
• 0
2
votes
4
replies
1.5k
views
CopywriteR job runs out of memory
copywriter
cnv
updated 5.7 years ago by
oscarkrijgsman
▴ 20 • written 5.7 years ago by
Ram
▴ 220
0
votes
1
reply
1.4k
views
CopywriteR - low coverage-regions display very low numbers
copywriter
copynumber
updated 7.3 years ago by
t.kuilman
▴ 170 • written 7.3 years ago by
magdaaverte
• 0
3
votes
12
replies
3.0k
views
S4Vectors and subectHits error
s4vectors
copywriter
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
TriS
▴ 200
1
vote
2
replies
2.2k
views
BiocParallel and CopywriteR Error
bioconductor
biocparallel
copywriter
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
genomic8328
▴ 10
0
votes
1
reply
1.5k
views
Problems with CopywriteR
copywriter
updated 8.8 years ago by
t.kuilman
▴ 170 • written 8.8 years ago by
filipzembol
• 0
0
votes
1
reply
2.2k
views
CopywriteR: CNV calling on normals samples / gaps in chromosomes
copynumber
cnvtools
cnv
copywriteR
updated 9.5 years ago by
t.kuilman
▴ 170 • written 9.5 years ago by
ahinsahr11
• 0
0
votes
3
replies
1.9k
views
CopywriteR error: "Error in .Method"
CopywriteR
9.5 years ago
Tom
▴ 10
1
vote
3
replies
1.9k
views
CopywriteR can't finish calculating copy number
copywriter
bam
updated 9.6 years ago by
t.kuilman
▴ 170 • written 9.6 years ago by
thestaroceanster
• 0
3
votes
3
replies
4.8k
views
Preparing CopywriteR output for GISTIC 2.0 analysis
copywriter
updated 9.9 years ago by
t.kuilman
▴ 170 • written 9.9 years ago by
jcarter
• 0
2
votes
4
replies
3.1k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter
dnacopy
updated 9.9 years ago by
t.kuilman
▴ 170 • written 9.9 years ago by
jcarter
• 0
1
vote
2
replies
1.7k
views
Copywriter output looks strange
copywriter
9.9 years ago
MatthewGField
▴ 10
2
votes
9
replies
3.5k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 9.9 years ago by
t.kuilman
▴ 170 • written 10.0 years ago by
smcnulty
• 0
0
votes
7
replies
2.7k
views
Multithreading CopywriteR on SLURM cluster
copywriter
slurm
openMPI
updated 9.9 years ago by
t.kuilman
▴ 170 • written 9.9 years ago by
smcnulty
• 0
0
votes
1
reply
1.8k
views
CopywriteR - choosing optimal bin size for targeted sequencing panel
copywriter
bin size
targeted sequencing
updated 9.9 years ago by
t.kuilman
▴ 170 • written 9.9 years ago by
sshung
• 0
2
votes
1
reply
1.7k
views
Copyhelper: Preprocession of mappability
CopywriteR
updated 10.0 years ago by
t.kuilman
▴ 170 • written 10.0 years ago by
Felix
• 0
17 results • Page
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
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It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
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The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
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I updated the above answer today.
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68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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