Bioconductor CopywriteR

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CopywriteR CopyhelpeR

12 months ago fer_talavera • 0

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776

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CopywriteR

updated 12 months ago by fer_talavera • 0 • written 3.5 years ago by Joshua • 0

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1.2k

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copywriter cnv

updated 5.0 years ago by oscarkrijgsman ▴ 20 • written 5.0 years ago by Ram ▴ 220

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1.2k

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copywriter copynumber

updated 6.6 years ago by t.kuilman ▴ 170 • written 6.6 years ago by magdaaverte • 0

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2.6k

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s4vectors copywriter

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by TriS ▴ 200

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bioconductor biocparallel copywriter

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by genomic8328 ▴ 10

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1.4k

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copywriter

updated 8.1 years ago by t.kuilman ▴ 170 • written 8.1 years ago by filipzembol • 0

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2.0k

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copynumber cnvtools cnv copywriteR

updated 8.7 years ago by t.kuilman ▴ 170 • written 8.7 years ago by ahinsahr11 • 0

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1.7k

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CopywriteR

8.8 years ago Tom ▴ 10

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1.7k

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copywriter bam

updated 8.9 years ago by t.kuilman ▴ 170 • written 8.9 years ago by thestaroceanster • 0

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4.4k

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copywriter

updated 9.1 years ago by t.kuilman ▴ 170 • written 9.1 years ago by jcarter • 0

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2.8k

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copywriter dnacopy

updated 9.2 years ago by t.kuilman ▴ 170 • written 9.2 years ago by jcarter • 0

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1.5k

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copywriter

9.2 years ago MatthewGField ▴ 10

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CopywriteR copy number

updated 9.2 years ago by t.kuilman ▴ 170 • written 9.2 years ago by smcnulty • 0

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2.4k

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copywriter slurm openMPI

updated 9.2 years ago by t.kuilman ▴ 170 • written 9.2 years ago by smcnulty • 0

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1.6k

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copywriter bin size targeted sequencing

updated 9.2 years ago by t.kuilman ▴ 170 • written 9.2 years ago by sshung • 0

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1.5k

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CopywriteR

updated 9.3 years ago by t.kuilman ▴ 170 • written 9.3 years ago by Felix • 0

17 results • Page 1 of 1

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Answer: edgeR::cpm() results in negative values from raw counts of 0 by ATpoint ★ 4.8k

The function, when `log = TRUE` adds a small prior count to the counts before taking the log, avoiding taking the log of 0. If that prior i…

Answer: edgeR::cpm() results in negative values from raw counts of 0 by James W. MacDonald 68k

It's calculated exactly how you might expect (it's called counts/million counts for a reason). ``` > y <- matrix(rnbinom(20,size=1,mu=…

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Leonardo Collado Torres ★ 1.1k

Thanks for posting this Kinnary. See also https://github.com/LieberInstitute/spatialLIBD/issues/106 for more details on the background.

Answer: Gene Ontology (GO) Analysis by James W. MacDonald 68k

The main difference is that `enrichGO` fits a conventional hypergeometric test whereas `hyperGTest` allows you to do a conditional test as …

Comment: blockwiseModule crashes in the end and doesn't generate modules by drivingdirectionsonline • 0

Solution: The error is likely due to a conflicting cor() function from another package (like psych). Restart R, run blockwiseModules() befo…

Votes

edgeR::cpm() results in negative values from raw counts of 0

Comment: Differential expression analysis using two TCGA datasets

C: Annotating HTA 2.0 genes

A: Annotating HTA 2.0 genes

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