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customprodb
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463
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customProDB easyrun error in generating a custom protein database: Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse")
customProDB
11 months ago
Esraa
• 0
0
votes
1
reply
487
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB
easyrun
error
mm10
Mus_musculus_Data
updated 12 months ago by
James W. MacDonald
65k • written 12 months ago by
Esraa
• 0
0
votes
0
replies
293
views
customProDB: error aberrant fasta from SNV
customProDB
15 months ago
finoa.li
• 0
0
votes
0
replies
460
views
CustomProDB: specify a snp dataset to be used for the SNP annotation
customProDB
21 months ago
04.marshal-decibel
• 0
0
votes
0
replies
804
views
How to get the chrominfo from ENSEMBL? (biomaRt and customProDB)
biomaRt
customProDB
22 months ago
04.marshal-decibel
• 0
0
votes
1
reply
762
views
customProDB: function PrepareAnnotationEnsembl() not working (biomart issue?)
customProDB
Ensembl connection
biomart
4.5 years ago
laura.fancello
• 0
0
votes
1
reply
806
views
CustomProDB InputVcf() - Issue getting the GRanges INDEL object from VCF file
vcf
snv
gatk
customprodb
inputvcf
4.9 years ago
Elena.M
• 0
4
votes
9
replies
3.1k
views
Create protein sequences including variants from a VCF file
VariantAnnotation
customProDB
updated 2 days ago by
Yun
• 0 • written 5.2 years ago by
daniel.magnus.bader
▴ 50
0
votes
1
reply
935
views
customProDB: "complex" SNV scenarios handling
customprodb
updated 5.7 years ago by
xiaojing.wang
▴ 50 • written 5.7 years ago by
iranmdl15
• 0
0
votes
1
reply
917
views
Error with PrepareAnnotationRefseq: "tablenametotrack2: UCSC table "refGene" is not supported"
customProDB
updated 5.8 years ago by
xiaojing.wang
▴ 50 • written 5.9 years ago by
samupatt
• 0
0
votes
1
reply
948
views
aaVariation function bug (Methonine instead of Leucine)
customprodb
translation
updated 5.8 years ago by
xiaojing.wang
▴ 50 • written 6.1 years ago by
georges.bedran
• 0
0
votes
3
replies
1.7k
views
calculateRPKM error in customProDB
software error
customprodb
updated 2.5 years ago by
Anne
• 0 • written 6.8 years ago by
javamng
▴ 10
0
votes
0
replies
924
views
Annotation package generation error for customprodb for hg38
customprodb
6.3 years ago
arunima2
• 0
1
vote
1
reply
1.5k
views
error with calculateRPKM in customProDB
customProDB
software error
updated 2.5 years ago by
Anne
• 0 • written 6.8 years ago by
javamng
▴ 10
0
votes
1
reply
1.1k
views
customProDB, OutputVarproseq function update (snvproseq)
customprodb
updated 7.4 years ago by
xiaojing.wang
▴ 50 • written 7.4 years ago by
georges.bedran
• 0
0
votes
0
replies
1.1k
views
PrepareAnnotationRefseq2 function error!
PGA
customprodb
7.8 years ago
yeh234
• 0
0
votes
1
reply
1.1k
views
CustomproDB JunctionType function
customprodb
updated 7.9 years ago by
xiaojing.wang
▴ 50 • written 7.9 years ago by
georges.bedran
• 0
0
votes
1
reply
1.1k
views
Pull request for customProDB package
customProDB
featurerequest
updated 8.0 years ago by
Dan Tenenbaum
★ 8.2k • written 8.0 years ago by
matt.chambers42
▴ 10
2
votes
4
replies
1.9k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 8.9 years ago by
xiaojing.wang
▴ 50 • written 8.9 years ago by
kristenbeck527
• 0
2
votes
2
replies
1.7k
views
customProDB: issues getting dbSNP data for human (hg19)
customprodb
dbsnp
refseq
varianttools
updated 8.9 years ago by
xiaojing.wang
▴ 50 • written 8.9 years ago by
kristenbeck527
• 0
2
votes
4
replies
1.7k
views
customProDB: issues getting dbSNP data for non-model organism
ensembl
macaque
dbsnp
customprodb
updated 8.9 years ago by
xiaojing.wang
▴ 50 • written 8.9 years ago by
kristenbeck527
• 0
21 results • Page
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Recent ...
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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