Bioconductor Cytof

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1.6k

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Cydar CyTOF normalization

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by ghogg • 0

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1.1k

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deseq2 mass cytometry CyTOF

updated 3.6 years ago by Michael Love 41k • written 3.6 years ago by mikhael.manurung ▴ 270

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914

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cydar CyTOF

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by mikhael.manurung ▴ 270

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2.8k

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flowCore flowcore CyToF Rtsne

updated 8.7 years ago by Jiang, Mike ★ 1.3k • written 8.7 years ago by clevy ▴ 10

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1.3k

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cytofkit cytof write.csv output

updated 7.5 years ago by chen_hao ▴ 30 • written 7.5 years ago by cjackson13 • 0

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627

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batch effect cytof

4.1 years ago mikhael.manurung ▴ 270

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1.4k

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Cytofast FlowSom CyTOF fcs files

3.6 years ago domenico.somma • 0

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712

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cytofWorkflow cytof diffcyt

3.3 years ago achaillon • 0

8 results • Page 1 of 1

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Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

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C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Comment: Help with error using camera() in limma

Answer: Help with error using camera() in limma

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