Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
deconvolution
•
reset
2
votes
2
replies
1.2k
views
How to deal with Expression set assembly problem?
deconvolution
r
scRNAseq
bioinformatics
2.2 years ago
Hasan Alanya
• 0
0
votes
0
replies
920
views
Best deconvolution method
Deconvolution
2.5 years ago
Barista
• 0
0
votes
1
reply
654
views
PSEA deconvolution; some of the coefficient is NA?
PSEA
Deconvolution
3.9 years ago
kavator
▴ 30
0
votes
0
replies
880
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
4.1 years ago
marcin.bazyliszek
• 0
0
votes
2
replies
741
views
csSAMfit with covariates
limma
microarray
deconvolution
cell type
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
antgomo
• 0
0
votes
4
replies
1.3k
views
varianceStabilizingTransformation for clustering, deconvolution
deseq2
deconvolution
normalization
limma
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
bruce.moran
▴ 30
0
votes
2
replies
1.1k
views
Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2
deconvolution
rnaseq
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
jennyl.smith12
• 0
0
votes
0
replies
904
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
6.3 years ago
casey.rimland
▴ 150
1
vote
1
reply
1.0k
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution
rnaseq
psea
6.3 years ago
WouterDeCoster
▴ 130
0
votes
1
reply
2.2k
views
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution
rna-seq
updated 8.6 years ago by
Steve Lianoglou
★ 13k • written 8.6 years ago by
Pauly Lin
▴ 150
0
votes
0
replies
1.6k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
8.9 years ago
carleshf
▴ 10
11 results • Page
1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
Awards
• All
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Zainab
• 0
Popular Question
to
Theo
▴ 10
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Locations
• All
WEHI, Melbourne, Australia,
16 minutes ago
France,
41 minutes ago
Iran,
1 hour ago
Bangalore,
1 hour ago
Sweden,
2 hours ago
Traffic: 658 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6