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Deconvolution
•
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0
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0
replies
149
views
Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution
rnaseqGene
RNAseq
29 days ago
JG13
• 0
2
votes
2
replies
1.3k
views
How to deal with Expression set assembly problem?
deconvolution
r
scRNAseq
bioinformatics
2.5 years ago
Hasan Alanya
• 0
0
votes
0
replies
1.0k
views
Best deconvolution method
Deconvolution
2.7 years ago
Barista
• 0
0
votes
1
reply
704
views
PSEA deconvolution; some of the coefficient is NA?
PSEA
Deconvolution
4.1 years ago
kavator
▴ 30
0
votes
0
replies
954
views
Deconvolution methods from WGBS data (methylation)
methylCC
deconvolution
methylation
dmrseq
serum
4.3 years ago
marcin.bazyliszek
• 0
0
votes
2
replies
801
views
csSAMfit with covariates
limma
microarray
deconvolution
cell type
updated 4.4 years ago by
Gordon Smyth
51k • written 4.4 years ago by
antgomo
• 0
0
votes
4
replies
1.4k
views
varianceStabilizingTransformation for clustering, deconvolution
deseq2
deconvolution
normalization
limma
updated 5.5 years ago by
Michael Love
42k • written 5.5 years ago by
bruce.moran
▴ 30
0
votes
2
replies
1.2k
views
Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2
deconvolution
rnaseq
updated 6.1 years ago by
Michael Love
42k • written 6.1 years ago by
jennyl.smith12
• 0
0
votes
0
replies
960
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
6.5 years ago
casey.rimland
▴ 160
1
vote
1
reply
1.1k
views
Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution
rnaseq
psea
6.5 years ago
WouterDeCoster
▴ 130
1
vote
1
reply
2.4k
views
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution
rna-seq
updated 8.8 years ago by
Steve Lianoglou
★ 13k • written 8.8 years ago by
Pauly Lin
▴ 160
0
votes
0
replies
1.6k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
9.1 years ago
carleshf
▴ 10
12 results • Page
1 of 1
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
▴ 730
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to
maltethodberg
▴ 180
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to
Michael Love
42k
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Leonardo Collado Torres
★ 1.1k
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to
Gordon Smyth
51k
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