Showing : degseq • reset
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RNA-seq analysis and two-way ANOVAs
edgeR baySeq DEGseq DESeq DEXSeq edgeR baySeq DEGseq DESeq DEXSeq
updated 12.6 years ago by 52k • written 12.6 years ago by ▴ 160
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Experimental design for RNA-Seq
edgeR DEGseq DESeq edgeR DEGseq DESeq
updated 14.8 years ago by ★ 6.0k • written 14.8 years ago by ★ 3.4k
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New package to identify differentially expressed genes from RNA-seq data
Annotation DEGseq Annotation DEGseq
updated 15.5 years ago by ▴ 110 • written 15.5 years ago by ★ 6.0k
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how to make a contrast of uniquely DE genes
edgeR limma RNA-seq DEGseq
4.0 years ago decppced • 0
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9
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1.8k
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limma fo continous variables
limma DEGseq
updated 13 months ago by 68k • written 13 months ago by • 0
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Analysis of public GEO datasets - NGS
DEGseq DEGseq
updated 12.5 years ago by ▴ 350 • written 12.5 years ago by ★ 13k
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1.6k
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Create the design matrix
DEGseq edgeR RNASeq
2.2 years ago Mohammad • 0
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1.6k
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Problems in running easyRNASeq
Annotation Organism DEGseq easyRNASeq Annotation Organism DEGseq easyRNASeq
updated 12.2 years ago by ★ 1.2k • written 12.2 years ago by ★ 13k
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NGS public data analysis
Transcription DEGseq Transcription DEGseq
12.5 years ago Jill Pleasance ▴ 10
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DeSeq2- design experiment
rnaseq degseq
7.4 years ago laksharikrish • 0
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1.4k
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Problem with DEGseq/samWrapper
degseq
updated 7.8 years ago by • 0 • written 10.3 years ago by ▴ 30
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1.4k
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Help with plot comparison
baySeq DEGseq baySeq DEGseq
13.1 years ago Tina Asante Boahene ▴ 100
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FDR (False Discovery Rate)
baySeq DEGseq baySeq DEGseq
13.1 years ago Tina Asante Boahene ▴ 100
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1.3k
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How to figure out the FC value from Limma
limma DEGseq DifferentialExpression
updated 2.8 years ago by ★ 4.0k • written 2.8 years ago by • 0
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DEGseq help
baySeq DEGseq baySeq DEGseq
13.1 years ago Tina Asante Boahene ▴ 100
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1.2k
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 2.7 years ago by ★ 1.4k • written 2.7 years ago by • 0
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New package to identify differentially expressed genes from RNA-seq data
Annotation DEGseq Annotation DEGseq
15.5 years ago Likun Wang ▴ 50
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1.2k
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A question on DESeq
edgeR DEGseq DESeq edgeR DEGseq DESeq
updated 14.7 years ago by ★ 3.8k • written 14.7 years ago by ▴ 50
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Extracting gene lists per timepoints using DEGPPatterns package and LRT
DEGseq clusterProfiler DEGreport
2.4 years ago Rob • 0
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R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar DEGseq MicroarrayData
updated 3.3 years ago by 68k • written 3.3 years ago by • 0
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A question on baySeq
Normalization DEGseq DESeq Normalization DEGseq DESeq
14.7 years ago sunghee OH ▴ 50
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Regarding q-value
DEGseq DEGseq
11.8 years ago deepika lakhwani ▴ 170
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RNA-Seq Reads Count
DESeq2 htseq DEGseq RNASeq read
updated 2.4 years ago by 43k • written 2.4 years ago by • 0
1
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DESeq2 desing formula for cell fraction and siRNA scramble
DEGseq DESeq2 Designformula
updated 3.9 years ago by ★ 1.4k • written 3.9 years ago by • 0
0
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874
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Meta analysis
DEGseq Metanalysis
updated 3.4 years ago by ★ 4.0k • written 3.4 years ago by • 0
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861
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Why was the number of DEG different between DESeq results and count by myself using excel?
RNASeqData DEGseq
updated 19 months ago by ★ 4.8k • written 19 months ago by • 0
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820
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RNA seq differential expression analysis
DEGseq RNASeqData limma
updated 21 months ago by 52k • written 21 months ago by • 0
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Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
RNA RNASeqPower DEGseq
written 4 months ago by • 0
28 results • Page 1 of 1
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Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta by GA ▴ 10
Thank you!
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Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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