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degseq
•
reset
2
votes
5
replies
1.2k
views
Create the design matrix
DEGseq
edgeR
RNASeq
16 months ago
Mohammad
• 0
1
vote
4
replies
943
views
How to figure out the FC value from Limma
limma
DEGseq
DifferentialExpression
updated 24 months ago by
Kevin Blighe
★ 3.9k • written 24 months ago by
beslinail
• 0
1
vote
7
replies
1.4k
views
how to make a contrast of uniquely DE genes
edgeR
limma
RNA-seq
DEGseq
3.2 years ago
decppced
• 0
1
vote
2
replies
827
views
DESeq2 desing formula for cell fraction and siRNA scramble
DEGseq
DESeq2
Designformula
updated 3.0 years ago by
swbarnes2
★ 1.4k • written 3.0 years ago by
Nicolò
• 0
0
votes
0
replies
952
views
A question on baySeq
Normalization
DEGseq
DESeq
Normalization
DEGseq
DESeq
13.8 years ago
sunghee OH
▴ 50
0
votes
3
replies
1.2k
views
Help with plot comparison
baySeq
DEGseq
baySeq
DEGseq
12.2 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.2k
views
FDR (False Discovery Rate)
baySeq
DEGseq
baySeq
DEGseq
12.3 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.1k
views
DEGseq help
baySeq
DEGseq
baySeq
DEGseq
12.3 years ago
Tina Asante Boahene
▴ 100
0
votes
1
reply
4.1k
views
RNA-seq analysis and two-way ANOVAs
edgeR
baySeq
DEGseq
DESeq
DEXSeq
edgeR
baySeq
DEGseq
DESeq
DEXSeq
updated 11.7 years ago by
Gordon Smyth
50k • written 11.7 years ago by
Elena Sorokin
▴ 150
0
votes
0
replies
1.3k
views
NGS public data analysis
Transcription
DEGseq
Transcription
DEGseq
11.7 years ago
Jill Pleasance
▴ 10
0
votes
3
replies
1.4k
views
Analysis of public GEO datasets - NGS
DEGseq
DEGseq
updated 11.7 years ago by
Aliaksei Holik
▴ 350 • written 11.7 years ago by
Guest User
★ 13k
0
votes
1
reply
1.4k
views
Problems in running easyRNASeq
Annotation
Organism
DEGseq
easyRNASeq
Annotation
Organism
DEGseq
easyRNASeq
updated 11.3 years ago by
delhomme@embl.de
★ 1.2k • written 11.3 years ago by
Guest User
★ 13k
0
votes
0
replies
923
views
Regarding q-value
DEGseq
DEGseq
10.9 years ago
deepika lakhwani
▴ 170
0
votes
0
replies
1.1k
views
New package to identify differentially expressed genes from RNA-seq data
Annotation
DEGseq
Annotation
DEGseq
14.6 years ago
Likun Wang
▴ 50
0
votes
3
replies
1.1k
views
DeSeq2- design experiment
rnaseq
degseq
6.6 years ago
laksharikrish
• 0
0
votes
2
replies
942
views
Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression
GeneExpression
R
enrichment
DEGseq
updated 22 months ago by
swbarnes2
★ 1.4k • written 22 months ago by
ac.mainul.mmb
• 0
0
votes
9
replies
589
views
limma fo continous variables
limma
DEGseq
updated 11 weeks ago by
James W. MacDonald
65k • written 12 weeks ago by
mia
• 0
0
votes
1
reply
704
views
Meta analysis
DEGseq
Metanalysis
updated 2.6 years ago by
Kevin Blighe
★ 3.9k • written 2.6 years ago by
biomyscience
• 0
0
votes
1
reply
878
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar
DEGseq
MicroarrayData
updated 2.5 years ago by
James W. MacDonald
65k • written 2.5 years ago by
biomyscience
• 0
0
votes
2
replies
729
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 18 months ago by
Michael Love
42k • written 18 months ago by
CP
• 0
0
votes
2
replies
583
views
RNA seq differential expression analysis
DEGseq
RNASeqData
limma
updated 11 months ago by
Gordon Smyth
50k • written 11 months ago by
Shaimaa Gamal
• 0
0
votes
0
replies
863
views
Extracting gene lists per timepoints using DEGPPatterns package and LRT
DEGseq
clusterProfiler
DEGreport
18 months ago
Rob
• 0
0
votes
1
reply
531
views
Why was the number of DEG different between DESeq results and count by myself using excel?
RNASeqData
DEGseq
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
sybyun419
• 0
0
votes
1
reply
1.2k
views
Problem with DEGseq/samWrapper
degseq
updated 6.9 years ago by
ab.tsubaki
• 0 • written 9.5 years ago by
jovel_juan
▴ 30
0
votes
3
replies
1.7k
views
New package to identify differentially expressed genes from RNA-seq data
Annotation
DEGseq
Annotation
DEGseq
updated 14.6 years ago by
Ulrike Goebel
▴ 110 • written 14.6 years ago by
Naomi Altman
★ 6.0k
0
votes
8
replies
2.0k
views
Experimental design for RNA-Seq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 14.0 years ago by
Naomi Altman
★ 6.0k • written 14.0 years ago by
michael watson IAH-C
★ 3.4k
0
votes
1
reply
1.1k
views
A question on DESeq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 13.8 years ago by
Simon Anders
★ 3.7k • written 13.8 years ago by
sunghee OH
▴ 50
27 results • Page
1 of 1
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Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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