Bioconductor Dendrogram

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4.7k

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dendrogram hclust textanalysis R RStudio

4.6 years ago • updated 4.5 years ago Abby ▴ 10

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3.6k

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pheatmap hclust R dendrogram

8.5 years ago vd4mmind • 0

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4.4k

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complexheatmap heatmap.2 dendrogram dendextend heatmap

updated 9.0 years ago by jokergoo ▴ 200 • written 9.0 years ago by enricoferrero ▴ 680

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4.7k

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wgcna dendrogram network hclust

updated 11.1 years ago by Keith Hughitt ▴ 180 • written 11.1 years ago by Jon Bråte ▴ 270

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4.3k

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wgcna hclust plotdendroandcolors dendrogram

updated 11.1 years ago by James W. MacDonald 68k • written 11.1 years ago by Keith Hughitt ▴ 180

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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