Bioconductor Dendrogram

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dendrogram hclust textanalysis R RStudio

4.4 years ago Abby ▴ 10

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pheatmap hclust R dendrogram

8.3 years ago vd4mmind • 0

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complexheatmap heatmap.2 dendrogram dendextend heatmap

updated 8.8 years ago by jokergoo ▴ 200 • written 8.8 years ago by enricoferrero ▴ 680

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wgcna dendrogram network hclust

updated 10.9 years ago by Keith Hughitt ▴ 180 • written 10.9 years ago by Jon Bråte ▴ 270

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wgcna hclust plotdendroandcolors dendrogram

updated 10.9 years ago by James W. MacDonald 68k • written 10.9 years ago by Keith Hughitt ▴ 180

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

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Can NanoString data be analyzed using DESeq2?

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