Showing : dendrogram • reset
1
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7
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4.8k
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Error with hclust
dendrogram hclust textanalysis R RStudio
4.7 years ago Abby ▴ 10
0
votes
1
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3.6k
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How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap hclust R dendrogram
8.6 years ago vd4mmind • 0
2
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1
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4.5k
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Assign custom dendrogram to ComplexHeatmap Heatmap object
complexheatmap heatmap.2 dendrogram dendextend heatmap
updated 9.2 years ago by ▴ 200 • written 9.2 years ago by ▴ 680
1
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2
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4.8k
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Rearrange dendrogram to match merged modules in WGCNA?
wgcna dendrogram network hclust
updated 11.2 years ago by ▴ 180 • written 11.2 years ago by ▴ 270
0
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1
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4.3k
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Plotting an hclust sub-tree in WGCNA?
wgcna hclust plotdendroandcolors dendrogram
updated 11.2 years ago by 68k • written 11.2 years ago by ▴ 180
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Comment: segfault in edgeR glmQLFit by Gordon Smyth 53k
We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.
Answer: Ensembl site unresponsive via biomaRt by horaortiz8 • 0
I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…
Comment: segfault in edgeR glmQLFit by Mark • 0
Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ATpoint ★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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