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dendrogram
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reset
1
vote
7
replies
2.7k
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Error with hclust
dendrogram
hclust
textanalysis
R
RStudio
3.0 years ago • updated 2.9 years ago
Abby
▴ 10
1
vote
2
replies
3.9k
views
Rearrange dendrogram to match merged modules in WGCNA?
wgcna
dendrogram
network
hclust
updated 9.5 years ago by
Keith Hughitt
▴ 180 • written 9.5 years ago by
Jon Bråte
▴ 250
0
votes
1
reply
3.5k
views
Plotting an hclust sub-tree in WGCNA?
wgcna
hclust
plotdendroandcolors
dendrogram
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
Keith Hughitt
▴ 180
2
votes
1
reply
3.4k
views
Assign custom dendrogram to ComplexHeatmap Heatmap object
complexheatmap
heatmap.2
dendrogram
dendextend
heatmap
updated 7.4 years ago by
jokergoo
▴ 200 • written 7.4 years ago by
enricoferrero
▴ 660
0
votes
1
reply
2.7k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap
hclust
R
dendrogram
6.9 years ago
vd4mmind
• 0
5 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
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Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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