Bioconductor Dependencies

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versions BiocVersion dependencies

updated 3.1 years ago by shepherl 3.8k • written 3.1 years ago by sohitmiglani • 0

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917

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R package dependencies

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by MAPK • 0

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1.0k

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cran package development dependencies

updated 5.5 years ago by Peter Langfelder ★ 3.0k • written 5.5 years ago by bjgrant • 0

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854

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dependencies error

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by ericaugustoito • 0

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1.3k

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package installation dependencies bagfootr bagfoot

updated 6.5 years ago by Sean Davis 21k • written 6.5 years ago by rbronste ▴ 60

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2.2k

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scde ubuntu dependencies R

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by aditya531996 • 0

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2.3k

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deseq2 ubuntu edger dependencies

7.2 years ago aditya531996 • 0

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1.7k

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rhdf5 hdf5 dependencies

updated 7.8 years ago by Mike Smith ★ 6.5k • written 7.8 years ago by thabermann • 0

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6.0k

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parathyroidse package installation dependencies

updated 7.9 years ago by Hervé Pagès 16k • written 7.9 years ago by mmalek • 0

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2.6k

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annotationhub dependencies

8.4 years ago dalloliogm ▴ 50

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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