Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
derfinder
•
reset
3
votes
2
replies
1.6k
views
DESeq2 normalization when using with derfinder
Normalization
DESeq2
derfinder
4.2 years ago
Debayan
▴ 20
4
votes
4
replies
1.9k
views
derfinder model.matrix with limma or single base-level F-statistics analysis
derfinder
4.5 years ago • updated 4.4 years ago
Konstantinos Yeles
▴ 90
3
votes
5
replies
1.9k
views
Detection of large regions of expression
derfinder
intergenic expression
updated 6.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 6.3 years ago by
António Miguel de Jesus Domingues
▴ 510
3
votes
3
replies
2.5k
views
derfinder: how to merge regions and counts from individual chromosomes
derfinder
recount
updated 8.1 years ago by
Leonardo Collado Torres
★ 1.1k • written 8.1 years ago by
António Miguel de Jesus Domingues
▴ 510
2
votes
1
reply
1.9k
views
derfinder mean Expressed Region cutoff
derfinder
updated 8.1 years ago by
Leonardo Collado Torres
★ 1.1k • written 8.1 years ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
3
replies
1.9k
views
How to preserve the strand of coverage in derfinder::regionMatrix() ?
derfinder
updated 8.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 8.4 years ago by
fruce_ki
▴ 20
3
votes
13
replies
3.7k
views
IRanges error from derfinder analyzeChr with custom TxDb?
derfinder
genomicfeatures
genomicranges
updated 8.4 years ago by
Leonardo Collado Torres
★ 1.1k • written 8.4 years ago by
fruce_ki
▴ 20
2
votes
1
reply
1.6k
views
Read normalization in derfinder
derfinder
normalization
rnaseq
updated 8.4 years ago by
Leonardo Collado Torres
★ 1.1k • written 8.4 years ago by
helene.gylling
▴ 10
2
votes
1
reply
1.4k
views
Derinder options (species, annotations style)
derfinder
rnaseq
differential expression
updated 8.5 years ago by
Leonardo Collado Torres
★ 1.1k • written 8.5 years ago by
fruce_ki
▴ 20
0
votes
1
reply
1.8k
views
derfinder fullCoverage() changes chromosome style and then regionMatrix() complains and ignores provided 'currentStyle'
derfinder
8.7 years ago
Wayne
• 0
0
votes
7
replies
3.1k
views
regionMatrix for derfinder crashes with seqnames issue on non-human data
derfinder
GenomeInfoDb
GenomicRanges
8.7 years ago
Wayne
• 0
0
votes
1
reply
2.1k
views
error with base-level DERfinder using large sample sizes
derfinder
updated 8.8 years ago by
Leonardo Collado Torres
★ 1.1k • written 8.8 years ago by
andrewelamb
• 0
1
vote
10
replies
4.5k
views
Issue creating a genomic state object in derfinder from an Ensembl GTF file
derfinder
genomicfeatures
8.9 years ago
Leonardo Collado Torres
★ 1.1k
1
vote
2
replies
1.7k
views
derfinder on bacteria PE strand specific RNA-seq
derfinder
9.1 years ago
eva.pinatel
▴ 10
2
votes
6
replies
2.8k
views
derfinder gets stuck in calculatePvalues
derfinder
software error
rnaseq
10.6 years ago • updated 10.5 years ago
drramki.chop
• 0
0
votes
1
reply
1.8k
views
derfinder fails on findRegions step
derfinder
updated 10.6 years ago by
Leonardo Collado Torres
★ 1.1k • written 10.6 years ago by
pschaugh
• 0
9
votes
20
replies
4.0k
views
derfinder: analyzeChr() freezes in f-stat calculation
derfinder
updated 10.8 years ago by
Leonardo Collado Torres
★ 1.1k • written 10.8 years ago by
jessica.hekman
▴ 40
0
votes
1
reply
2.0k
views
Error message suggestion for fullCoverage in derfinder
derfinder
updated 10.8 years ago by
Leonardo Collado Torres
★ 1.1k • written 11.0 years ago by
jessica.hekman
▴ 40
1
vote
10
replies
3.2k
views
derfinder failing in mergeResults()
derfinder
updated 10.8 years ago by
Leonardo Collado Torres
★ 1.1k • written 11.1 years ago by
jessica.hekman
▴ 40
8
votes
31
replies
6.6k
views
derfinder: analyzeChr() breaks on chromosomes > 22
derfinder
11.2 years ago
jessica.hekman
▴ 40
2
votes
3
replies
1.8k
views
derfinder: mergeResults() running for three days and still going...
derfinder
11.2 years ago
jessica.hekman
▴ 40
5
votes
20
replies
4.6k
views
derfinder: fullCoverage() problems
derfinder
updated 11.2 years ago by
Leonardo Collado Torres
★ 1.1k • written 11.2 years ago by
jessica.hekman
▴ 40
0
votes
6
replies
2.6k
views
derfinder and BAM indexes
derfinder
11.2 years ago
jessica.hekman
▴ 40
23 results • Page
1 of 1
Recent ...
Replies
Comment: Incosistencies in buildSNNGraph() function
by
ATpoint
★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function
by
Aaron Lun
★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Votes
Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Awards
• All
Popular Question
to
Lluís Revilla Sancho
▴ 760
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Aleena_Ensembl
▴ 30
Popular Question
to
Hervé Pagès
16k
Teacher
to
Michael Love
43k
Locations
• All
Finland,
4 minutes ago
United States,
11 minutes ago
United States,
13 minutes ago
United States,
1 hour ago
United States,
1 hour ago
Traffic: 1903 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6