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deseq
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evaluate the variable importance on genes
DESeq2
deseq
3 months ago
Meme
• 0
0
votes
2
replies
353
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Running DESeq on normalized data
deseq
DESeq2
updated 5 months ago by
ATpoint
★ 4.2k • written 5 months ago by
Hugo
• 0
2
votes
2
replies
548
views
Predicting missing values splines DESeq2
deseq
DESeq2
6 months ago
georgii.vdovin
• 0
0
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1
reply
401
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Controling for Covariates With a Continuous Predictor Variable
Deseq
DESeq2
updated 6 months ago by
Michael Love
42k • written 6 months ago by
georgii.vdovin
• 0
0
votes
1
reply
687
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Can I transform already normalized rna-seq data with Z-score?
Z-score
RNASeqData
Deseq
DESeq2
updated 8 months ago by
James W. MacDonald
66k • written 8 months ago by
khaserdene99
• 0
0
votes
3
replies
1.0k
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Difference between DESeqDataSetFromMatrix() function and DESeq() function
DESeq
DESeq2
updated 9 months ago by
ATpoint
★ 4.2k • written 9 months ago by
Abir.khazaal
▴ 10
0
votes
4
replies
677
views
lfc direction of effect flipped for ashr, apeGLM, but accurate to biological data for non-shrunken
DESeq2
apeglm
DESeq
ApeGLM
Ashr
updated 10 months ago by
Michael Love
42k • written 10 months ago by
Ndimensional
▴ 20
6
votes
11
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26k
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With DESeq2 "Not full rank" Error with design ~ line + time + condition
deseq
deseq2
updated 9 months ago by
Erika
• 0 • written 9.3 years ago by
c.lieftink@nki.nl
▴ 40
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Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
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shepherl
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An outage was reported at the location we store the Bioconductor archives. We are in process of temporarily activating a different backup …
Answer: unable to access bioconductor packages - qvalue installation failed...
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shepherl
3.9k
An outage was reported at the location we store the Bioconductor archives. We are in process of temporarily activating a different backup …
Comment: Get gene symbols for a set of hg19 coordinates
by
pcantalupo
▴ 10
Now why didn't I think of that? I had tunnel vision thinking I needed to use an annotation package. Thank you ATpoint!
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
by
Konstantin
• 0
It works with "Germany (Gottingen)"! Thanks!
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
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mgdrnl
• 0
I solved the problem installing the latest R version (4.4.0)
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Comment: miRTarRnaseq library
Answer: Get gene symbols for a set of hg19 coordinates
Answer: Get gene symbols for a set of hg19 coordinates
Comment: recount3 problem downloading data from source sra
Not able to install any Bioconductor 3.18 package [unable to access index]
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