Bioconductor Differential expression analysis

Showing : differential expression analysis • reset

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2.5k

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EdgeR differential expression analysis covariates

updated 4.4 years ago by Gordon Smyth 51k • written 4.4 years ago by Lucy ▴ 60

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969

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EdgeR edgeR RNA-seq differential expression analysis blocking factors

updated 4.4 years ago by Gordon Smyth 51k • written 4.4 years ago by Lucy ▴ 60

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deseq2 mirdeep2 microRNA differential expression analysis

updated 4.6 years ago by Michael Love 42k • written 4.6 years ago by ljbond • 0

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microarray differential expression analysis GPL2025 affymetrix

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by pratikshasharma47 • 0

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deseq2 scRNA-Seq RNA-Seq differential expression analysis

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by hamza_karakurt ▴ 60

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3.9k

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deseq2 rna-seq differential expression analysis

5.7 years ago shreygandhi1990 ▴ 10

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differential expression analysis ballgown r batch effects total number of reads

updated 6.1 years ago by James W. MacDonald 67k • written 6.1 years ago by amy16 • 0

7 results • Page 1 of 1

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Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for all of your help! I really appreciate it!

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by Gordon Smyth 51k

Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

Thansk Herve', I will try. For reference this is the parallelization implementation of zellkonverter, to save anndata from SCE https://gi…

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Jason • 0

Any update on the resolution to this? I'm having the same issue with another species.

Votes

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

biomaRt rnorvegicus_gene_ensembl not available anymore

A: Does edgeR need to specify reference group?

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Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20