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GenomicInteractions duplicate annotations
duplicate
GenomicInteractions
5.5 years ago
dogancan
• 0
1
vote
3
replies
3.7k
views
duplicated row names when creating DESeqDataSetFromMatrix
deseq2
DESeqDataSetFromMatrix
duplicate
updated 7.7 years ago by
James W. MacDonald
68k • written 7.7 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
4
replies
2.0k
views
calling combineFeatures twice causes duplicate row.names
msnbase
duplicate
rforproteomics
updated 7.9 years ago by
Laurent Gatto
1.6k • written 7.9 years ago by
joris.vanhoutven
▴ 10
2
votes
1
reply
2.2k
views
How to remmove duplicated paired end alignments
alignment
duplicate
updated 8.9 years ago by
Aaron Lun
★ 29k • written 8.9 years ago by
Frocha
▴ 20
3
votes
16
replies
5.7k
views
Any way to proceed duplicate removal for list of GRanges object ?
r
grangeslist
duplicate
updated 8.9 years ago by
Martin Morgan
25k • written 8.9 years ago by
Jurat Shahidin
▴ 80
3
votes
3
replies
2.5k
views
getBM function, search for annotation characteristics with entrezgene filters --> result with duplicates
getBM
entrez gene identifiers
duplicate
rnaseq
8.9 years ago
Jose Luis Soto Vázquez
• 0
6 results • Page
1 of 1
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Comment: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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