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duplicate
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reset
0
votes
5
replies
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GenomicInteractions duplicate annotations
duplicate
GenomicInteractions
5.7 years ago
dogancan
• 0
1
vote
3
replies
3.8k
views
duplicated row names when creating DESeqDataSetFromMatrix
deseq2
DESeqDataSetFromMatrix
duplicate
updated 7.8 years ago by
James W. MacDonald
68k • written 7.8 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
4
replies
2.1k
views
calling combineFeatures twice causes duplicate row.names
msnbase
duplicate
rforproteomics
updated 8.0 years ago by
Laurent Gatto
1.6k • written 8.0 years ago by
joris.vanhoutven
▴ 10
2
votes
1
reply
2.3k
views
How to remmove duplicated paired end alignments
alignment
duplicate
updated 9.0 years ago by
Aaron Lun
★ 29k • written 9.0 years ago by
Frocha
▴ 20
3
votes
16
replies
5.8k
views
Any way to proceed duplicate removal for list of GRanges object ?
r
grangeslist
duplicate
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
Jurat Shahidin
▴ 80
3
votes
3
replies
2.6k
views
getBM function, search for annotation characteristics with entrezgene filters --> result with duplicates
getBM
entrez gene identifiers
duplicate
rnaseq
9.0 years ago
Jose Luis Soto Vázquez
• 0
6 results • Page
1 of 1
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
I updated the above answer today.
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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