Showing : ensembl release • reset
5
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9
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Correct version of EnsDb.Hsapiens for ensembl transcriptome
ensembldb ensembl release rnaseq salmon tximport
7.0 years ago emmak ▴ 20
0
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2
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1.6k
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Txtimport for kallisto on hg38 v87
txtimport deseq2 ensembl release
updated 7.9 years ago by 68k • written 7.9 years ago by ▴ 40
1
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1
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1.4k
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News: Ensembl release 86 is out!
ensembl biomart ensembl release ensembl mart News
8.4 years ago Thomas Maurel ▴ 800
1
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0
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1.4k
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News: Ensembl release 85 is out!
ensembl biomart release85 ensembl release mart News
8.6 years ago Thomas Maurel ▴ 800
4
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9
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3.5k
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News: Ensembl release 84 is out!
ensembl mart release84 biomart ensembl release News
updated 8.8 years ago by ▴ 20 • written 8.9 years ago by ▴ 800
0
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0
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1.8k
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News: Ensembl 83 is out!
ensemble mart ensembl biomart ensembl release News
9.2 years ago amonida ▴ 20
6 results • Page 1 of 1
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Replies
Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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