Bioconductor Ensembl release

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ensembldb ensembl release rnaseq salmon tximport

8.0 years ago emmak ▴ 20

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txtimport deseq2 ensembl release

updated 8.8 years ago by James W. MacDonald 68k • written 8.8 years ago by jarod_v6@libero.it ▴ 40

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ensembl biomart ensembl release ensembl mart News

9.3 years ago Thomas Maurel ▴ 800

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ensembl biomart release85 ensembl release mart News

9.5 years ago Thomas Maurel ▴ 800

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ensembl mart release84 biomart ensembl release News

updated 9.8 years ago by arielpaulson ▴ 20 • written 9.9 years ago by Thomas Maurel ▴ 800

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ensemble mart ensembl biomart ensembl release News

10.1 years ago amonida ▴ 20

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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0

Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …

Comment: limpa analysis advice by Gordon Smyth 53k

I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…

Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k

As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…

Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k

Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…

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Comment: limpa analysis advice

C: AnnotationForge makeOrgPackage rsqlite_send_query error

Answer: Limpa Pipeline Order

Answer: Array weights in dpcDE

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