Bioconductor Ensemble mart

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biomart ensemblbiomart ensemble mart

6.7 years ago emmak ▴ 20

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ensembl ensemble mart ensembl mart biomart News

8.0 years ago amonida ▴ 20

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biomart regulatory ensemble mart ensembldb

updated 8.5 years ago by Thomas Maurel ▴ 800 • written 8.5 years ago by Sigve Nakken ▴ 50

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biomart ensemble mart

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by andrew.j.skelton73 ▴ 370

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biomart ensembl ensemble mart entrez gene identifiers

8.9 years ago serpalma.v ▴ 60

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ensemble mart ensembl biomart ensembl release News

9.0 years ago amonida ▴ 20

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R biomart ensemble mart

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by Gabriela Santos • 0

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

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Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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