Bioconductor Ensemble mart

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biomart ensemblbiomart ensemble mart

7.0 years ago emmak ▴ 20

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ensembl ensemble mart ensembl mart biomart News

8.3 years ago amonida ▴ 20

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biomart regulatory ensemble mart ensembldb

updated 8.8 years ago by Thomas Maurel ▴ 800 • written 8.8 years ago by Sigve Nakken ▴ 50

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biomart ensemble mart

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by andrew.j.skelton73 ▴ 370

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biomart ensembl ensemble mart entrez gene identifiers

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ensemble mart ensembl biomart ensembl release News

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R biomart ensemble mart

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by Gabriela Santos • 0

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Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati by Mei • 0

I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…

Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0

Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k

It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…

Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

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Comment: plyranges: find exact GRanges match keeping metadata columns

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

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