Bioconductor Epic microarray

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champ epic microarray normalization minfi

7.7 years ago Laura • 0

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minfi epic microarray bioconductor

updated 3.5 years ago by Lucy • 0 • written 7.8 years ago by c.sae-lee2 • 0

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2.6k

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bioconductor methylation epic microarray champ

8.0 years ago csappleby-mallinder1 • 0

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methylation epic microarray minfi methylationepic

8.9 years ago nhejazi • 0

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.9 years ago chelsey.ju • 0

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rnbeads methylation illumina epic microarray

9.4 years ago rasii • 0

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minfi dmpfinder dmp illuminahumanmethylationepicanno.ilmn10b.hg19 epic microarray

updated 9.5 years ago by James W. MacDonald 68k • written 9.5 years ago by Biologist ▴ 120

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2.1k

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minfi methylation EPIC microarray illumina

updated 9.7 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.7 years ago by rasii • 0

8 results • Page 1 of 1

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Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …

Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 10

You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…

Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k

Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…

Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k

The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…

Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0

Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…

Votes

C: ControlGenes/ housekeeping genes Deseq2

Answer: Clarification on counting in Rsubread (featureCounts)

C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results

A: Conversion from counts to FPKM

Awards • All

Great Question to fl ▴ 20

Popular Question to Lluís Revilla Sancho ▴ 760