Bioconductor Epicv2manifest

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EPICv2 EPICv2manifest

15 days ago • updated 8 days ago Joshua Llano • 0

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214

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conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest

updated 4 weeks ago by James W. MacDonald 68k • written 4 weeks ago by luca.mangherini • 0

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214

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minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest

8 weeks ago charlie.wright • 0

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366

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missMethyl EPICv2manifest

updated 12 weeks ago by James W. MacDonald 68k • written 12 weeks ago by maximuscfyeung • 0

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405

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MethylationArray methy EPICv2manifest

4 months ago Meghan • 0

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486

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minfi EPICv2manifest

4 months ago Rakesh • 0

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360

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EPICv2manifest IlluminaHumanMethylationEPICv2anno.20a1.hg38

9 months ago MajaVu • 0

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508

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minfi EPICv2manifest MethylAid

9 months ago pcibin • 0

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1.5k

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sesame EPICv2manifest epicv2

9 months ago luca.s ▴ 50

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2.4k

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EPICV1 Methylation combineArrays minifi EPICv2manifest

updated 6 months ago by rania.alanany • 0 • written 12 months ago by Kim • 0

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 11 months ago by Tim Peters ▴ 230 • written 12 months ago by s.malik • 0

11 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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