Showing : epicv2manifest • reset
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Filtering out non-variable probes from EPICv2 matrix
DMRcate EPICv2manifest
updated 8 months ago by 68k • written 8 months ago by • 0
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2
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1.4k
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CpGs with genomic positions greater than the chromosome size in EPICv2?
EPICv2 EPICv2manifest
9 months ago Joshua Llano • 0
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2
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714
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Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 10 months ago by 68k • written 10 months ago by • 0
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370
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
11 months ago charlie.wright • 0
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2
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691
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MissMethyl failed to use gometh function for EPICv2
missMethyl EPICv2manifest
updated 12 months ago by 68k • written 12 months ago by • 0
1
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2
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582
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Epic v2 Annotation CpG_maf source?
MethylationArray methy EPICv2manifest
13 months ago Meghan • 0
2
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2
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823
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preprocessIllumina error with EPICv2 array
minfi EPICv2manifest
13 months ago Rakesh • 0
0
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0
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528
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EPIC v2 annotation and BigWig
EPICv2manifest IlluminaHumanMethylationEPICv2anno.20a1.hg38
18 months ago MajaVu • 0
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0
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750
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Problem with MethylAid ("Cannot get Manifest object for an 'Unknown' array") and Epicv2
minfi EPICv2manifest MethylAid
18 months ago pcibin • 0
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4
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2.5k
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SeSAMe DMR for EPIC V2
sesame EPICv2manifest epicv2
updated 5 months ago by • 0 • written 18 months ago by ▴ 50
1
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3
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3.1k
views
CombineArrays for EPIC and EPIC V2
EPICV1 Methylation combineArrays minifi EPICv2manifest
updated 15 months ago by • 0 • written 21 months ago by • 0
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6
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1.8k
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unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 21 months ago by ▴ 230 • written 21 months ago by • 0
12 results • Page 1 of 1
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Comment: Converting Probe IDs to HGNC symbols by Manav ▴ 10
ah thank u so much
Comment: Guitar R package requires update due to dependency GenomicFeatures by Sean Davis 21k
A great way to communicate such a nice troubleshooting and bug fix hint is to file an issue in github: https://github.com/lzcyzm/Guitar/iss…
Answer: Converting Probe IDs to HGNC symbols by Sean Davis 21k
The brainarray annotations are very confusing, as the IDs in the fData look like affymetrix probe IDs. To clarify, the brainarray project m…
Comment: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k
If you have fake replicates, then I think my code answers your question about how to run the edgeR time-course analysis. Regarding tutoria…
Comment: How to do differential expresion across time serise with edgeR? by petergrahamclark ▴ 10
The use case is kinetic model parameterisation. I'm actually a systems biologist not a bioinformatician. (which is why I'm struggling here)…
Votes
Answer: Converting Probe IDs to HGNC symbols
Converting Probe IDs to HGNC symbols
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
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