Showing : epicv2manifest • reset
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Filtering out non-variable probes from EPICv2 matrix
DMRcate EPICv2manifest
updated 7 months ago by 68k • written 7 months ago by • 0
1
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2
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1.4k
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CpGs with genomic positions greater than the chromosome size in EPICv2?
EPICv2 EPICv2manifest
8 months ago Joshua Llano • 0
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2
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659
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Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 9 months ago by 68k • written 9 months ago by • 0
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0
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351
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
9 months ago charlie.wright • 0
0
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2
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643
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MissMethyl failed to use gometh function for EPICv2
missMethyl EPICv2manifest
updated 11 months ago by 68k • written 11 months ago by • 0
1
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2
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557
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Epic v2 Annotation CpG_maf source?
MethylationArray methy EPICv2manifest
12 months ago Meghan • 0
2
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2
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781
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preprocessIllumina error with EPICv2 array
minfi EPICv2manifest
12 months ago Rakesh • 0
0
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0
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504
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EPIC v2 annotation and BigWig
EPICv2manifest IlluminaHumanMethylationEPICv2anno.20a1.hg38
17 months ago MajaVu • 0
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0
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718
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Problem with MethylAid ("Cannot get Manifest object for an 'Unknown' array") and Epicv2
minfi EPICv2manifest MethylAid
17 months ago pcibin • 0
1
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4
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2.4k
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SeSAMe DMR for EPIC V2
sesame EPICv2manifest epicv2
updated 4 months ago by • 0 • written 17 months ago by ▴ 50
1
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3
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2.9k
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CombineArrays for EPIC and EPIC V2
EPICV1 Methylation combineArrays minifi EPICv2manifest
updated 14 months ago by • 0 • written 20 months ago by • 0
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6
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1.7k
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unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 20 months ago by ▴ 230 • written 20 months ago by • 0
12 results • Page 1 of 1
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Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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Commentator to sina.nassiri ▴ 130
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Popular Question to James W. MacDonald 68k
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