Showing : epicv2manifest • reset
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Filtering out non-variable probes from EPICv2 matrix
DMRcate EPICv2manifest
updated 7 months ago by 68k • written 7 months ago by • 0
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2
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1.4k
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CpGs with genomic positions greater than the chromosome size in EPICv2?
EPICv2 EPICv2manifest
8 months ago Joshua Llano • 0
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2
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666
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Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 9 months ago by 68k • written 9 months ago by • 0
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353
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
10 months ago charlie.wright • 0
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2
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647
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MissMethyl failed to use gometh function for EPICv2
missMethyl EPICv2manifest
updated 11 months ago by 68k • written 11 months ago by • 0
1
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2
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566
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Epic v2 Annotation CpG_maf source?
MethylationArray methy EPICv2manifest
12 months ago Meghan • 0
2
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2
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788
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preprocessIllumina error with EPICv2 array
minfi EPICv2manifest
12 months ago Rakesh • 0
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507
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EPIC v2 annotation and BigWig
EPICv2manifest IlluminaHumanMethylationEPICv2anno.20a1.hg38
17 months ago MajaVu • 0
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726
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Problem with MethylAid ("Cannot get Manifest object for an 'Unknown' array") and Epicv2
minfi EPICv2manifest MethylAid
17 months ago pcibin • 0
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4
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2.4k
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SeSAMe DMR for EPIC V2
sesame EPICv2manifest epicv2
updated 4 months ago by • 0 • written 17 months ago by ▴ 50
1
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3
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3.0k
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CombineArrays for EPIC and EPIC V2
EPICV1 Methylation combineArrays minifi EPICv2manifest
updated 14 months ago by • 0 • written 20 months ago by • 0
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6
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1.8k
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unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 20 months ago by ▴ 230 • written 20 months ago by • 0
12 results • Page 1 of 1
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
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