Bioconductor Exon array analysis

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878

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pd.huex.1.0.st.v2 exon array analysis

updated 5.5 years ago by James W. MacDonald 65k • written 5.5 years ago by GENOMIC_region • 0

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908

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exons exon array analysis

updated 5.5 years ago by James W. MacDonald 65k • written 5.5 years ago by GENOMIC_region • 0

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1.4k

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 6.6 years ago by James W. MacDonald 65k • written 6.6 years ago by relathman ▴ 20

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1.6k

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onechannelgui exon array analysis R

8.5 years ago anna.dolnik • 0

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3.0k

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oligo exon array analysis

updated 8.9 years ago by Marc Carlson ★ 7.2k • written 8.9 years ago by Elena Serrano ▴ 30

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1.3k

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exomecopy exon array analysis CODEX

9.0 years ago kaushal Raj Chaudhary ▴ 10

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3.4k

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affymetrixchip GenechipHumanTranscriptomeArray2.0 exon array analysis

9.2 years ago svlachavas ▴ 830

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5.3k

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exonmap exon array analysis bioconductor

9.2 years ago svlachavas ▴ 830

8 results • Page 1 of 1

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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

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Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

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Scholar to Rory Stark ★ 5.2k

Popular Question to tangming2005 ▴ 190