Bioconductor Fdrtool

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2.6k

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p-value FDR DEP

updated 3.8 years ago by António Miguel de Jesus Domingues ▴ 510 • written 4.3 years ago by Alexei Leliavski ▴ 60

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1.3k

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fdrtool

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by Paul • 0

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deseq2 fdrtool apeglm

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by Paul • 0

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deseq2 rnaseq sva fdrtool ihw

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by rihards.saksis • 0

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1.8k

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deseq2 mirna fdrtool

updated 6.1 years ago by Robert Castelo ★ 3.4k • written 6.1 years ago by L_K • 0

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1.1k

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deseq2 fdrtool

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by bioinfo • 0

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4.1k

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deseq2 rnaseq fdrtool

updated 6.4 years ago by Ryan C. Thompson ★ 7.9k • written 6.4 years ago by C T ▴ 140

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1.5k

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pvalue adjusted pvalue fdrtool

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by hele7 ▴ 20

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3.1k

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fdrtool deseq2

7.3 years ago rrcutler ▴ 70

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8.0k

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deseq2 rnaseq fdrtool dispersion

updated 7.4 years ago by Bernd Klaus ▴ 610 • written 7.4 years ago by rrcutler ▴ 70

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2.6k

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deseq2 fdrtool genomicalignments

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by jakob.petereit ▴ 20

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rnaseq deseq2 fdrtool differential gene expression

7.6 years ago tcalvo ▴ 100

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2.8k

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fdrtool p-value distribution

8.0 years ago j.bergenstrahle ▴ 90

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deseq2 FDR fdrtool

updated 8.0 years ago by Bernd Klaus ▴ 610 • written 8.1 years ago by deena ▴ 20

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1.8k

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deseq2 multiple factor design FDR fdrtool

updated 8.1 years ago by Michael Love 43k • written 8.1 years ago by marieke • 0

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deseq2 fdrtool

updated 8.8 years ago by Bernd Klaus ▴ 610 • written 8.8 years ago by dhibar ▴ 60

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2.5k

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deseq2 rnaseq contrast multiple comparisons fdrtool

8.9 years ago sebastiano.curreli • 0

17 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

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Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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