Bioconductor Fdrtool

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p-value FDR DEP

updated 4.4 years ago by António Miguel de Jesus Domingues ▴ 510 • written 4.9 years ago by Alexei Leliavski ▴ 60

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fdrtool

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by Paul • 0

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deseq2 fdrtool apeglm

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by Paul • 0

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deseq2 rnaseq sva fdrtool ihw

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by rihards.saksis • 0

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deseq2 mirna fdrtool

updated 6.7 years ago by Robert Castelo ★ 3.4k • written 6.7 years ago by L_K • 0

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deseq2 fdrtool

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by bioinfo • 0

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deseq2 rnaseq fdrtool

updated 7.0 years ago by Ryan C. Thompson ★ 7.9k • written 7.1 years ago by C T ▴ 140

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pvalue adjusted pvalue fdrtool

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by hele7 ▴ 20

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fdrtool deseq2

7.9 years ago rrcutler ▴ 70

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deseq2 rnaseq fdrtool dispersion

updated 8.0 years ago by Bernd Klaus ▴ 610 • written 8.0 years ago by rrcutler ▴ 70

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deseq2 fdrtool genomicalignments

updated 8.1 years ago by Michael Love 43k • written 8.1 years ago by jakob.petereit ▴ 20

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rnaseq deseq2 fdrtool differential gene expression

8.2 years ago tcalvo ▴ 100

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fdrtool p-value distribution

8.6 years ago j.bergenstrahle ▴ 90

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deseq2 FDR fdrtool

updated 8.7 years ago by Bernd Klaus ▴ 610 • written 8.7 years ago by deena ▴ 20

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deseq2 multiple factor design FDR fdrtool

updated 8.7 years ago by Michael Love 43k • written 8.7 years ago by marieke • 0

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deseq2 fdrtool

updated 9.4 years ago by Bernd Klaus ▴ 610 • written 9.4 years ago by dhibar ▴ 60

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deseq2 rnaseq contrast multiple comparisons fdrtool

9.5 years ago sebastiano.curreli • 0

17 results • Page 1 of 1

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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0

Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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