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Showing :
ihw
•
reset
1
vote
3
replies
278
views
Why are padj results different for BetaPrior = TRUE vs lfcShrink()?
IHW
lfcShrink
DESeq2
3 months ago
Ali Barry
▴ 30
2
votes
2
replies
375
views
Ashr and IHW
Ashr
LFCShrinkage
IHW
DESeq2
7 months ago
Bex
• 0
3
votes
3
replies
467
views
IHW: retain annotation columns in data when running `ihw(pvalue ~ covariate, data = ...)`
ihw
independent hypothesis weighting
2.3 years ago
david.laehnemann
▴ 10
2
votes
4
replies
460
views
DESeq2 - problem with inferring correct results.
deseq2
rnaseq
sva
fdrtool
ihw
updated 2.5 years ago by
Michael Love
37k • written 2.5 years ago by
rihards.saksis
• 0
0
votes
2
replies
369
views
DESeq2 and data.table impacted by IHW and lpsymphony
lpsymphony
IHW
updated 2.8 years ago by
Mike Smith
★ 5.7k • written 2.8 years ago by
mattjdowle
• 0
1
vote
2
replies
365
views
Does DESeq2 need to correct for overlapping regions?
deseq2
ihw
updated 2.9 years ago by
Michael Love
37k • written 3.0 years ago by
schwarzl
• 0
1
vote
2
replies
413
views
IHW scale of problem
ihw
p-value
multiple hypothesis
updated 3.2 years ago by
Wolfgang Huber
13k • written 3.2 years ago by
xiaotong.yao23
▴ 10
2
votes
3
replies
561
views
lpsymphony will not build
ihw
3.3 years ago
caldodge
▴ 20
0
votes
2
replies
366
views
Adjusting DESeq2 p-values through IHW using pathway information as covariate
IHW
deseq2
Pathway
updated 3.5 years ago by
Michael Love
37k • written 3.5 years ago by
guidobarzaghi
▴ 20
5
votes
6
replies
910
views
DESeq2 w. pathway/network info as a prior knowledge
deseq2
pathway
ihw
updated 3.5 years ago by
Michael Love
37k • written 3.5 years ago by
guidobarzaghi
▴ 20
7
votes
2
replies
435
views
Does IHW use the supplied alpha for the correction calculations?
IHW
deseq2
updated 3.5 years ago by
Nikos Ignatiadis
▴ 170 • written 3.5 years ago by
k.vitting.seerup
▴ 120
1
vote
4
replies
729
views
IHW multiple testing correction
IHW
multiple testing correction
covariate distribution
updated 3.7 years ago by
Wolfgang Huber
13k • written 3.8 years ago by
lara.h.urban
• 0
1
vote
3
replies
931
views
IHW and correlated covariates
ihw
5.7 years ago • updated 14 months ago
Michael Love
37k
0
votes
6
replies
862
views
Defining subsets for FDR correction
fdr
deseq2
ihw
updated 4.2 years ago by
Michael Love
37k • written 4.2 years ago by
sven.schenk
▴ 20
1
vote
3
replies
851
views
Libgomp error in IHW
ihw
updated 4.4 years ago by
vladislav.kim
▴ 10 • written 4.4 years ago by
Kipper Fletez-Brant
▴ 150
2
votes
2
replies
883
views
how to specify the number of cores used by IHW
IHW
lpsymphony
updated 4.9 years ago by
vladislav.kim
▴ 10 • written 4.9 years ago by
Charlotte Soneson
▴ 140
5
votes
1
reply
764
views
IHWpaper: choice of `nbins=4` in `proteomics_example_analysis.R`
ihw
updated 5.2 years ago by
Nikos Ignatiadis
▴ 170 • written 5.2 years ago by
paul.johnston
▴ 10
1
vote
4
replies
1.1k
views
IHW Package for R 3.2.5
deseq2
ihw
5.3 years ago
bekah
▴ 20
1
vote
2
replies
1.4k
views
How to use 'IHW' package to filter genes?
ihw
deseq2
edger
limma voom
updated 5.5 years ago by
Bernd Klaus
▴ 600 • written 5.5 years ago by
tofukaj
• 0
10
votes
2
replies
934
views
Possible to incorporate the sign or direction of an effect in the IHW covariate?
IHW
updated 6.3 years ago by
Nikos Ignatiadis
▴ 170 • written 6.4 years ago by
dhibar
▴ 60
20 results • Page
1 of 1
Recent ...
Replies
Comment: conditional command within GRanges
by
Basti
▴ 390
I can't reproduce your issue because you did not provided an example of your dataset (example with `dput(head(data1))`, but in the first ca…
Comment: Error in Create switchAnalyzeRlist
by
k.vitting.seerup
▴ 120
That sounds like you have the wrong version of the annotation compared to which version you used for the quantification?
Comment: Error in Create switchAnalyzeRlist
by
bpshtiwan
▴ 10
Great... now it is same. but still I have problem with four possibilities during using IsoformSwitchAnalyzeR. Knidly, any idea where is the…
Comment: Retrieve gene summary start/end in biomart query
by
rbenel
▴ 20
Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…
Comment: MMDiff2 memory issues
by
e.iich
• 0
running against a similar issue. Have you found any solutions?
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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