Bioconductor FeatureCounts

Showing : featureCounts • reset

votes

replies

6.1k

views

rsubread featurecounts

updated 12 weeks ago by Gordon Smyth 50k • written 9.1 years ago by Ryan C. Thompson ★ 7.9k

votes

replies

741

views

featurecounts Rsubread

3 months ago • updated 12 weeks ago isaac.vock • 0

votes

replies

1.6k

views

rsubread featurecounts summarizeoverlaps

updated 29 days ago by isaac.vock • 0 • written 7.9 years ago by Jon Manning ▴ 90

votes

replies

3.5k

views

RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

votes

replies

425

views

featureCounts Rsubread

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by tjgray4 • 0

votes

replies

18k

views

featurecounts rsubread

updated 10 months ago by Robert • 0 • written 9.0 years ago by samuel collombet ▴ 140

vote

replies

4.7k

views

subread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 2.8 years ago by s.muroy ▴ 10

votes

857

views

Bioconductor Rsubread featureCounts

updated 11 months ago by Wei Shi ★ 3.6k • written 12 months ago by Carlos • 0

vote

657

views

Rsubread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 9 months ago by StevenE.Strong • 0

vote

253

views

featureCounts Rsubread

updated 8 weeks ago by Wei Shi ★ 3.6k • written 11 weeks ago by Alex • 0

votes

replies

935

views

rpkm edgeR featureCounts

8 months ago Gordon Smyth 50k

votes

replies

136

views

FeatureCounts Rsubread

8 weeks ago chris2.a.white • 0

votes

replies

2.3k

views

featurecounts SAM htseqcounts

updated 9 months ago by Yang Liao ▴ 380 • written 7.0 years ago by courtney.stairs • 0

votes

replies

1.0k

views

RNASeqData Rsubread mapping featurecounts

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by vitoriastavis • 0

votes

replies

242

views

featureCounts Rsubread

29 days ago • updated 10 days ago isaac.vock • 0

15 results • Page 1 of 1

Recent ...

Replies

Comment: Assist me in determining whether the analysis process using the limma package ha by SSSJec • 0

Thanks for your reply. I understand the principle of adjusted P-values, but I still want to address that issue. The description of the G…

Comment: Why p value inconsistent when using different number of pathway score? by Gordon Smyth 50k

Just a note that fgsea is not classical GSEA. The classical GSEA as described in the Subramanian paper and other papers from the Broad Inst…

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by Chris • 0

Thank you! The resource I use may mispresent the requirement input of fgsea.

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by alserg ▴ 260

fgsea doesn't require the presence of deferentially expressed genes, it takes as the input the differential expression-based ranking of all…

Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Thanks Robert for an educative response!

Votes

Answer: Improving the design matrices vignette in RNAseq123

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha

Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)

Comment: Why p value inconsistent when using different number of pathway score?

Awards • All

Popular Question to Matthew Ritchie ▴ 1000

Scholar to alserg ▴ 260