Bioconductor Featurecounts

Showing : featurecounts • reset

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6.1k

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rsubread featurecounts

updated 11 weeks ago by Gordon Smyth 50k • written 9.1 years ago by Ryan C. Thompson ★ 7.9k

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739

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featurecounts Rsubread

3 months ago • updated 12 weeks ago isaac.vock • 0

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18k

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featurecounts rsubread

updated 10 months ago by Robert • 0 • written 9.0 years ago by samuel collombet ▴ 140

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1.6k

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rsubread featurecounts summarizeoverlaps

updated 26 days ago by isaac.vock • 0 • written 7.9 years ago by Jon Manning ▴ 90

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4.7k

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subread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 2.8 years ago by s.muroy ▴ 10

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652

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Rsubread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 9 months ago by StevenE.Strong • 0

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249

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featureCounts Rsubread

updated 7 weeks ago by Wei Shi ★ 3.6k • written 11 weeks ago by Alex • 0

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3.5k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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855

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Bioconductor Rsubread featureCounts

updated 11 months ago by Wei Shi ★ 3.6k • written 12 months ago by Carlos • 0

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238

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featureCounts Rsubread

26 days ago • updated 7 days ago isaac.vock • 0

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930

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rpkm edgeR featureCounts

8 months ago • updated 7 months ago Gordon Smyth 50k

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418

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featureCounts Rsubread

updated 12 weeks ago by Gordon Smyth 50k • written 12 weeks ago by tjgray4 • 0

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2.3k

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featurecounts SAM htseqcounts

updated 9 months ago by Yang Liao ▴ 380 • written 7.0 years ago by courtney.stairs • 0

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1.0k

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RNASeqData Rsubread mapping featurecounts

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by vitoriastavis • 0

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133

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FeatureCounts Rsubread

7 weeks ago chris2.a.white • 0

15 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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