Bioconductor Fishpond

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608

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swish salmon fishpond

updated 11 months ago by Michael Love 43k • written 11 months ago by Nicholas • 0

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1.3k

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fishpond swish

18 months ago Miguel ▴ 20

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919

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rna-seq salmon fishpond swish

updated 18 months ago by Michael Love 43k • written 18 months ago by samuelcjx • 0

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1.1k

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fishpond tximeta DESeq2

updated 15 months ago by Michael Love 43k • written 22 months ago by Rihards Saksis • 0

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1.3k

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fishpond DESeq2

updated 20 months ago by Michael Love 43k • written 2.4 years ago by alexyz • 0

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1.7k

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swish fishpond DifferentialExpression

2.4 years ago jvandinter • 0

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1.9k

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swish fishpond GenomicFeatures tximeta

updated 2.4 years ago by Michael Love 43k • written 2.7 years ago by jvandinter • 0

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1.7k

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fishpond swish

2.8 years ago msll0802 • 0

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1.7k

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salmon rna-seq swish bootstrap fishpond

updated 2.9 years ago by Michael Love 43k • written 2.9 years ago by samuelcjx • 0

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1.3k

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tximeta DESeq2 swish fishpond

updated 2.9 years ago by Michael Love 43k • written 2.9 years ago by jeremymsimon ▴ 20

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1.3k

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fishpond

3.3 years ago • updated 3.2 years ago Jean • 0

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2.6k

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DESeq2 fishpond salmon swish

3.3 years ago • updated 3.2 years ago Qin ▴ 10

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1.7k

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tximeta swish fishpond

updated 3.6 years ago by Michael Love 43k • written 3.7 years ago by Jack Riley • 0

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1.6k

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Swish fishpond

3.9 years ago • updated 3.8 years ago 675743 ▴ 20

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1.6k

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swish fishpond

4.2 years ago thomas.dugedebernonville • 0

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1.1k

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fishpond swish

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by 1911449 • 0

16 results • Page 1 of 1

Recent ...

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Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Hervé Pagès 16k

> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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