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flowdensity
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87
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flowDensity on a flowset
flowDensity
21 days ago
fredrikwallberg
• 0
0
votes
0
replies
213
views
News:
Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity
flowCore
3 months ago
info
▴ 10
0
votes
0
replies
591
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore
flowDensity
2.1 years ago
nmchavez
• 0
0
votes
1
reply
1.2k
views
flowDensity loop on flowSet
flowdensity
flowcore
for loop
updated 5.3 years ago by
Bioconductor Community
0 • written 5.4 years ago by
beshea.jj
• 0
0
votes
1
reply
1.1k
views
How do I apply a singleParameterTransform to a number of parameters in a flowFrame like the standard transforms?
flowcore
flow cytometry
flowdensity
hyperlog
transformation
updated 5.7 years ago by
Jiang, Mike
★ 1.3k • written 5.7 years ago by
Joseph.Hanson
• 0
1
vote
1
reply
841
views
flowDensity got downgraded
flowDensity
developers
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
mmalek
• 0
1
vote
1
reply
1.3k
views
flowDensity, nmRemove and xyplot
flowdensity
flowviz
updated 8.2 years ago by
Jiang, Mike
★ 1.3k • written 8.2 years ago by
Ulrik Stervbo
▴ 30
0
votes
0
replies
1.2k
views
flowDensity error only with upper=TRUE and alpha=0.001 arguments used together
flowdensity
9.6 years ago
rschmidt2
• 0
1
vote
0
replies
1.7k
views
Issue with flowDensity on OpenCyto
flowClust
openCyto
flowDensity
flowClust
openCyto
flowDensity
9.7 years ago
Jiang, Mike
★ 1.3k
0
votes
2
replies
1.2k
views
flowClean
flowClean
flowDensity
flowClean
flowDensity
updated 9.8 years ago by
Justin Meskas
▴ 60 • written 9.8 years ago by
Kipper Fletez-Brant
▴ 150
0
votes
5
replies
1.8k
views
installing flowDensity
flowDensity
flowDensity
updated 10.0 years ago by
Josef Spidlen
▴ 140 • written 10.1 years ago by
Raghu
▴ 20
0
votes
0
replies
921
views
Bioconductor Digest, Vol 134, Issue 10
openCyto
flowDensity
openCyto
flowDensity
10.1 years ago
Jiang, Mike
★ 1.3k
12 results • Page
1 of 1
Recent ...
Replies
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Votes
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
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