Bioconductor Galaxy

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Conference Community Galaxy GBCC2025 Bioconductor

14 days ago Maria Doyle ▴ 90

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1.1k

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DESeq2 Galaxy pca

updated 20 months ago by swbarnes2 ★ 1.4k • written 20 months ago by mbxdn1 • 0

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1.0k

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DESeq2 RNASeq Galaxy

updated 2.7 years ago by Michael Love 42k • written 2.7 years ago by István • 0

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1.8k

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ballgown StringTie galaxy rnaseq

updated 2.4 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by lakshmi9c • 0

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595

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deseq2 galaxy

updated 4.6 years ago by Michael Love 42k • written 4.6 years ago by mikelirastor • 0

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1.5k

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deseq2 galaxy

7.6 years ago gkuffel ▴ 10

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bioconductor next-generation sequencing galaxy

updated 7.9 years ago by Lucas Schiffer ▴ 240 • written 7.9 years ago by efraim.culfa • 0

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4.3k

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rnaseq galaxy deseq2

updated 8.6 years ago by Michael Love 42k • written 8.7 years ago by Marcelo Pereira ▴ 70

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1.3k

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DESeq2 Galaxy

updated 8.6 years ago by Michael Love 42k • written 8.6 years ago by Marcelo Pereira ▴ 70

9 results • Page 1 of 1

Recent ...

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k