Bioconductor Galaxy

Showing : galaxy • reset

votes

replies

566

views

Conference Community Galaxy GBCC2025 Bioconductor

13 months ago Maria Doyle ▴ 110

votes

replies

1.5k

views

DESeq2 Galaxy pca

updated 2.8 years ago by swbarnes2 ★ 1.4k • written 2.8 years ago by mbxdn1 • 0

votes

1.4k

views

DESeq2 RNASeq Galaxy

updated 3.8 years ago by Michael Love 43k • written 3.8 years ago by István • 0

votes

replies

2.3k

views

ballgown StringTie galaxy rnaseq

updated 3.5 years ago by Kevin Blighe ★ 4.0k • written 5.4 years ago by lakshmi9c • 0

votes

815

views

deseq2 galaxy

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by mikelirastor • 0

vote

replies

1.8k

views

deseq2 galaxy

8.7 years ago gkuffel ▴ 10

votes

replies

1.8k

views

bioconductor next-generation sequencing galaxy

updated 9.0 years ago by Lucas Schiffer ▴ 240 • written 9.0 years ago by efraim.culfa • 0

votes

replies

4.9k

views

rnaseq galaxy deseq2

updated 9.7 years ago by Michael Love 43k • written 9.8 years ago by Marcelo Pereira ▴ 70

votes

replies

1.6k

views

DESeq2 Galaxy

updated 9.7 years ago by Michael Love 43k • written 9.7 years ago by Marcelo Pereira ▴ 70

9 results • Page 1 of 1

Recent ...

Replies

Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0

For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Popular Question to James W. MacDonald 68k