Showing : gdc • reset
0
votes
11
replies
3.9k
views
TCGAbiolinks GDCquery downloads a file that reads "message": "internal server error"
tcgabiolinks gdc
8.5 years ago • updated 8.4 years ago jshelton • 0
3
votes
2
replies
2.8k
views
Difference in TCGA RNAseq expression values between GDC harmonized and legacy data
GDC TCGA tcgabiolinks
updated 3.0 years ago by • 0 • written 6.4 years ago by ▴ 10
19
votes
8
replies
4.0k
views
How to check the read length for all the TCGA data samples in GDC?
gdc tcga wes gdc data
updated 7.0 years ago by 21k • written 7.0 years ago by ▴ 120
7
votes
7
replies
2.0k
views
Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R gdc rna-seq dna methylation
updated 6.5 years ago by 21k • written 6.5 years ago by ▴ 50
4
votes
2
replies
1.5k
views
GenomicDataCommons request timeouts when cases() %>% ... %>% results_all()
genomicdatacommons tcga gdc rest http
updated 6.3 years ago by 21k • written 6.3 years ago by ▴ 20
0
votes
2
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4.2k
views
Extract gene expression values from GDCprepare object
tcgabiolinks tcga tcgadownload gdcprepare gdc
updated 8.1 years ago by ▴ 260 • written 8.2 years ago by • 0
1
vote
2
replies
1.7k
views
TCGA MAF (Mutations) data
TCGA MAF GDC snp mutations
updated 6.0 years ago by 21k • written 6.0 years ago by ▴ 160
0
votes
1
reply
840
views
GenomicDataCommons: Retrieve patient data for RPPA samples
TCGA GenomicDataCommons GDC
written 22 months ago by ▴ 510
0
votes
4
replies
1.6k
views
problem for downloading TCGA data by TCGAbiolikns package
TCGAbiolinks TCGA GDC
5.4 years ago modarzi ▴ 10
0
votes
0
replies
962
views
Problem for downloading TCGA cancer data by TCGAbiolinks
TCGAbiolinks GDC TCGA
5.4 years ago modarzi ▴ 10
0
votes
0
replies
1.4k
views
Filter TCGAbiolinks by Gene in Query
tcgabiolinks filtering gdc TCGABiolinks rnaseq
5.3 years ago jam526 • 0
0
votes
1
reply
3.6k
views
how to infer missing PAM50 molecular subtypes in TCGA-BRCA dataset downloaded with TCGABiolinks?
tcgabiolinks tcga-brca gdc pam50 rna-seq
7.1 years ago pfrancislyon • 0
12 results • Page 1 of 1
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Replies
Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq by caroline.zanchi • 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq by ATpoint ★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Votes
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
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