Bioconductor Gdc

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3.7k

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.1 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.3 years ago by enigmargs • 0

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3.2k

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tcgabiolinks gdc

7.5 years ago jshelton • 0

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3.1k

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gdc tcga wes gdc data

updated 6.1 years ago by Sean Davis 21k • written 6.1 years ago by Biologist ▴ 110

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3.0k

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tcgabiolinks tcga-brca gdc pam50 rna-seq

6.1 years ago pfrancislyon • 0

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2.2k

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GDC TCGA tcgabiolinks

updated 2.1 years ago by cute scientist • 0 • written 5.5 years ago by Antonio Ahn ▴ 10

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1.6k

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R gdc rna-seq dna methylation

updated 5.5 years ago by Sean Davis 21k • written 5.5 years ago by RichardJActon ▴ 50

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1.3k

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TCGA MAF GDC snp mutations

updated 5.0 years ago by Sean Davis 21k • written 5.0 years ago by mario.zanfardino ▴ 160

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1.2k

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TCGAbiolinks TCGA GDC

4.4 years ago modarzi ▴ 10

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1.1k

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genomicdatacommons tcga gdc rest http

updated 5.3 years ago by Sean Davis 21k • written 5.3 years ago by mk ▴ 20

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986

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tcgabiolinks filtering gdc TCGABiolinks rnaseq

4.3 years ago jam526 • 0

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716

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TCGAbiolinks GDC TCGA

4.4 years ago modarzi ▴ 10

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511

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TCGA GenomicDataCommons GDC

written 10 months ago by António Miguel de Jesus Domingues ▴ 510

12 results • Page 1 of 1

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Comment: Couldn't connect to server while using "pathways" by ATpoint ★ 4.1k

Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…

Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k