Bioconductor Gene set enrichment analysis

Showing : gene set enrichment analysis • reset

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1.3k

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typo NES rwikipathways downregulated genes gene set enrichment analysis

updated 6.7 years ago by alex.pico ▴ 30 • written 7.0 years ago by Fischer-philipp ▴ 30

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1.4k

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STRINGdb stringdb gene set enrichment analysis software error go

7.0 years ago wsciekly.maciek ▴ 10

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2.5k

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rsbml piano libsbml gene set enrichment analysis

updated 7.1 years ago by Michael Lawrence ★ 11k • written 7.1 years ago by jan.strauss • 0

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2.7k

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limma gene set enrichment analysis

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by khandarius ▴ 20

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6.0k

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clusterprofiler gene set enrichment analysis enricher sc-rnaseq

updated 7.4 years ago by Guangchuang Yu ★ 1.2k • written 7.4 years ago by atakanekiz ▴ 30

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1.9k

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clusterProfiler gseGO gene ontology go semantic similarity gene set enrichment analysis

7.5 years ago jan.soderman • 0

6 results • Page 1 of 1

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Comment: How can I correctly use phyloseq with Docker? by Suzy • 0

The graphics in [Snow Rider][1] are colorful and charming, adding to the festive atmosphere. [1]: https://snowriderio.io

Comment: GOseq Probability Weight Function bad fit by ejasge.r.m • 0

When performing GO analysis with GOseq, i s important to carefully check your input and assumptions, just like reviewing choices on the McD…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

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Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Commentator to sina.nassiri ▴ 130