Bioconductor Gene set enrichment analysis

Showing : gene set enrichment analysis • reset

votes

1.3k

views

typo NES rwikipathways downregulated genes gene set enrichment analysis

updated 6.6 years ago by alex.pico ▴ 30 • written 7.0 years ago by Fischer-philipp ▴ 30

votes

1.4k

views

STRINGdb stringdb gene set enrichment analysis software error go

7.0 years ago wsciekly.maciek ▴ 10

votes

replies

2.5k

views

rsbml piano libsbml gene set enrichment analysis

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by jan.strauss • 0

votes

replies

2.7k

views

limma gene set enrichment analysis

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by khandarius ▴ 20

votes

replies

6.0k

views

clusterprofiler gene set enrichment analysis enricher sc-rnaseq

updated 7.3 years ago by Guangchuang Yu ★ 1.2k • written 7.3 years ago by atakanekiz ▴ 30

votes

1.9k

views

clusterProfiler gseGO gene ontology go semantic similarity gene set enrichment analysis

7.4 years ago jan.soderman • 0

6 results • Page 1 of 1

Recent ...

Replies

Answer: Post translational modifications and phosphoproteomics in limpa? by Gordon Smyth 53k

Yes, we use limpa for PTMs ourselves. I assume your data is preprocessed so that each row corresponds to a PTM. You replace dpcQuant() with…

Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380

WOW! Thank you so much for the information. I will do this.

Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0

Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112

Answer: Add additional maintainer for MOFA2 by shepherl 4.2k

These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…

Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k

Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…

Votes

Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif

Using edgeR or DESeq2 to analyze allele-specific expression?

Answer: DESeq2 design for haplotype MPRA

Answer: Failure to download resources (MeSHDb) from AnnotationHub

Awards • All