Bioconductor Gene set testing

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778

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mroast camera gene set testing

4.3 years ago svlachavas ▴ 840

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limma camera gene set testing ensembl

updated 5.1 years ago by Robert Castelo ★ 3.4k • written 5.1 years ago by Jeremy Beales ▴ 10

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limma agilent microarrays mroast fry gene tests gene set testing

updated 6.3 years ago by Gordon Smyth 52k • written 6.3 years ago by svlachavas ▴ 840

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1.7k

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limma camera cameraPR edgeR gene set testing

updated 6.4 years ago by Gordon Smyth 52k • written 6.4 years ago by jamie.gearing ▴ 60

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1.5k

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limma roast statistics source code gene set testing

6.4 years ago Andrea Carenzo • 0

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gage gene set testing

updated 6.7 years ago by Luo Weijun ★ 1.6k • written 6.7 years ago by Aurora ▴ 20

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EGSEA gene set testing vooma limma voom gsea

updated 8 months ago by Chris ▴ 20 • written 8.1 years ago by Pekka Kohonen ▴ 190

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limma agilent microarrays gene set testing annotation

8.0 years ago Bouzid.a ▴ 20

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8.2 years ago Jon Bråte ▴ 260

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1.9k

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gene set testing camera edger

updated 8.6 years ago by Gordon Smyth 52k • written 8.6 years ago by le2336 ▴ 20

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gsea ncrna coexpression gene set analysis gene set testing

8.8 years ago m.fletcher ▴ 20

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limma camera gene set testing

8.8 years ago claire.n.levy ▴ 10

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3.4k

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limma mroast barcodeplot KEGG gene set testing

updated 9.2 years ago by Gordon Smyth 52k • written 9.2 years ago by svlachavas ▴ 840

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2.1k

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gene set testing roast mroast differential gene expression bioconductor

9.7 years ago svlachavas ▴ 840

14 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

Awards • All

Teacher to Axel Klenk ★ 1.1k