Showing : gene set testing • reset
0
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966
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Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
5.1 years ago svlachavas ▴ 840
4
votes
11
replies
3.5k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 5.9 years ago by ★ 3.4k • written 5.9 years ago by ▴ 10
2
votes
3
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1.8k
views
Perform limma based gene-set testing for a two-group comparison in a microarray dataset regarding specific biological processes
limma agilent microarrays mroast fry gene tests gene set testing
updated 7.1 years ago by 53k • written 7.1 years ago by ▴ 840
7
votes
2
replies
2.0k
views
Pre-ranked camera gene set testing with edgeR results
limma camera cameraPR edgeR gene set testing
updated 7.2 years ago by 53k • written 7.2 years ago by ▴ 60
1
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4
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1.7k
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
7.2 years ago Andrea Carenzo • 0
0
votes
1
reply
1.8k
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GAGE function and the same.dir option
gage gene set testing
updated 7.5 years ago by ★ 1.6k • written 7.5 years ago by ▴ 20
2
votes
4
replies
2.4k
views
EGSEA usage with microarray data (with vooma)?
EGSEA gene set testing vooma limma voom gsea
updated 18 months ago by ▴ 20 • written 8.9 years ago by ▴ 190
4
votes
6
replies
2.5k
views
Gene set Testing with Limma for Agilent IDs probes?
limma agilent microarrays gene set testing annotation
8.8 years ago Bouzid.a ▴ 20
7
votes
13
replies
3.3k
views
Test whether expression levels of two gene sets are significantly different
R DESeq2 gene set testing gene expression
9.0 years ago Jon Bråte ▴ 270
3
votes
4
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2.2k
views
Competitive gene set testing between two sets of genes
gene set testing camera edger
updated 9.4 years ago by 53k • written 9.4 years ago by ▴ 20
1
vote
0
replies
1.8k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea ncrna coexpression gene set analysis gene set testing
9.5 years ago m.fletcher ▴ 20
1
vote
5
replies
2.6k
views
Confused by results from CAMERA gene set testing
limma camera gene set testing
9.6 years ago claire.n.levy ▴ 10
7
votes
6
replies
3.8k
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Interpretation of mroast gene set analysis in R and appropriate use of the function barcode plot regarding a microarray dataset
limma mroast barcodeplot KEGG gene set testing
updated 9.9 years ago by 53k • written 9.9 years ago by ▴ 840
6
votes
10
replies
2.5k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing roast mroast differential gene expression bioconductor
10.5 years ago svlachavas ▴ 840
14 results • Page 1 of 1
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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