Bioconductor Genomeintervals

Showing : genomeintervals • reset

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genomeIntervals GenomicRanges

20 months ago gshweta95 • 0

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granges bed genomicranges genomeintervals deseq2

7.9 years ago rbronste ▴ 60

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genomeintervals UTRs exons CDS GenomicRanges

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by rubi ▴ 110

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nclist genomeintervals

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by Jurat Shahidin ▴ 80

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genomeIntervals

updated 10.4 years ago by Nicolas Delhomme ▴ 320 • written 10.7 years ago by mhz • 0

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genomeintervals

updated 10.4 years ago by Nicolas Delhomme ▴ 320 • written 10.4 years ago by sjackman • 0

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BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 12.7 years ago by Dan Tenenbaum ★ 8.2k • written 12.7 years ago by Wim Kreinen ▴ 100

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Annotation convert genomeIntervals Annotation convert genomeIntervals

13.8 years ago delhomme@embl.de ★ 1.2k

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genomeIntervals genomeIntervals

updated 14.7 years ago by Hervé Pagès 16k • written 14.7 years ago by Julien Gagneur ▴ 50

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Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO

15.8 years ago Robert Castelo ★ 3.4k

10 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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