Bioconductor Genomeintervals

Showing : genomeintervals • reset

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719

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genomeIntervals GenomicRanges

19 months ago gshweta95 • 0

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granges bed genomicranges genomeintervals deseq2

7.8 years ago rbronste ▴ 60

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genomeintervals UTRs exons CDS GenomicRanges

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by rubi ▴ 110

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nclist genomeintervals

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by Jurat Shahidin ▴ 80

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genomeIntervals

updated 10.4 years ago by Nicolas Delhomme ▴ 320 • written 10.6 years ago by mhz • 0

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genomeintervals

updated 10.4 years ago by Nicolas Delhomme ▴ 320 • written 10.4 years ago by sjackman • 0

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BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 12.7 years ago by Dan Tenenbaum ★ 8.2k • written 12.7 years ago by Wim Kreinen ▴ 100

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Annotation convert genomeIntervals Annotation convert genomeIntervals

13.7 years ago delhomme@embl.de ★ 1.2k

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genomeIntervals genomeIntervals

updated 14.6 years ago by Hervé Pagès 16k • written 14.6 years ago by Julien Gagneur ▴ 50

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Sequencing Annotation GO rtracklayer IRanges genomeIntervals Sequencing Annotation GO

15.8 years ago Robert Castelo ★ 3.4k

10 results • Page 1 of 1

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Answer: Integration: Paired-end vs healthy single-end from a different source by wba64023 • 0

Interesting comparison! The source differences can definitely impact read quality and bias. Curious to see how you handle normalization bet…

Comment: Could we detect difference at pathway level but not significant different at gen by wba64023 • 0

thanks for sharing! [slope 2][1] [1]: https://slope2.online

Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0

The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …

Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0

It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …

Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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Popular Question to Fred Hutch (Recruiting) ▴ 40