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genvisR
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
2.1 years ago
Amy_
• 0
3
votes
10
replies
3.4k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 12 months ago by
zlskidmore
▴ 30 • written 2.4 years ago by
abhisikta
• 0
0
votes
1
reply
1.3k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 2.5 years ago by
Hervé Pagès
16k • written 2.5 years ago by
Michel
• 0
0
votes
0
replies
2.2k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
2.5 years ago
e
• 0
0
votes
1
reply
1.2k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 4.0 years ago by
zlskidmore
▴ 30 • written 4.0 years ago by
Jeni
▴ 10
0
votes
1
reply
841
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
5.1 years ago
sheneicechang
• 0
0
votes
0
replies
1.1k
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
5.2 years ago
sheneicechang
• 0
0
votes
1
reply
1.2k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 6.0 years ago by
zlskidmore
▴ 30 • written 6.0 years ago by
ZihaoXing
• 0
0
votes
1
reply
990
views
Issues with lohSpec
genvisr
lohSpec
6.4 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.4k
views
Copy Number plot cnSpec - how to order samples
genvisr
6.5 years ago
cedric.vmdl
• 0
0
votes
4
replies
2.2k
views
GenVisR- cnSpec CNV plot
GenVisR
6.9 years ago • updated 6.8 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.4k
views
an error in TvTi: package GenVisR
GenVisR
updated 7.8 years ago by
zlskidmore
▴ 30 • written 7.8 years ago by
Bogdan
▴ 670
2
votes
5
replies
3.0k
views
GenVisR Installation error message
genvisR
8.8 years ago • updated 8.7 years ago
Deep Adhya
▴ 20
13 results • Page
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Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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