Showing : genvisR • reset
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GenVisR - adding on genomic positions to CovGen graph
GenVisR GenCov
2.1 years ago Amy_ • 0
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3.4k
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error in package GenVisR while installing
GenVisR GenVis
updated 12 months ago by ▴ 30 • written 2.3 years ago by • 0
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1.3k
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Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 2.4 years ago by 16k • written 2.4 years ago by • 0
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How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR maftools
2.4 years ago e • 0
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1.2k
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Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants waterfall GenVisR
updated 4.0 years ago by ▴ 30 • written 4.0 years ago by ▴ 10
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832
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Adding layer to legend in waterfall plot
GenVisR ggplot2 waterfall
5.1 years ago sheneicechang • 0
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1.1k
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
5.1 years ago sheneicechang • 0
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1
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1.2k
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how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr genvisr waterfall mutation
updated 5.9 years ago by ▴ 30 • written 6.0 years ago by • 0
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983
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Issues with lohSpec
genvisr lohSpec
6.3 years ago dharia.priyadarshani • 0
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1.4k
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Copy Number plot cnSpec - how to order samples
genvisr
6.4 years ago cedric.vmdl • 0
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2.2k
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GenVisR- cnSpec CNV plot
GenVisR
6.8 years ago daijieqiong ▴ 10
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2
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1.4k
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an error in TvTi: package GenVisR
GenVisR
updated 7.7 years ago by ▴ 30 • written 7.7 years ago by ▴ 670
2
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5
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GenVisR Installation error message
genvisR
8.7 years ago Deep Adhya ▴ 20
13 results • Page 1 of 1
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Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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