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genvisR
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
3.1 years ago
Amy_
• 0
3
votes
10
replies
4.2k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 24 months ago by
zlskidmore
▴ 30 • written 3.3 years ago by
abhisikta
• 0
0
votes
1
reply
1.7k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 3.4 years ago by
Hervé Pagès
16k • written 3.4 years ago by
Michel
• 0
0
votes
0
replies
2.8k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
3.4 years ago
e
• 0
0
votes
1
reply
1.6k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 5.0 years ago by
zlskidmore
▴ 30 • written 5.0 years ago by
Jeni
▴ 10
0
votes
1
reply
1.1k
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
6.1 years ago
sheneicechang
• 0
0
votes
0
replies
1.3k
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
6.1 years ago
sheneicechang
• 0
0
votes
1
reply
1.5k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 6.9 years ago by
zlskidmore
▴ 30 • written 7.0 years ago by
ZihaoXing
• 0
0
votes
1
reply
1.2k
views
Issues with lohSpec
genvisr
lohSpec
7.3 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.7k
views
Copy Number plot cnSpec - how to order samples
genvisr
7.4 years ago
cedric.vmdl
• 0
0
votes
4
replies
2.8k
views
GenVisR- cnSpec CNV plot
GenVisR
7.8 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.6k
views
an error in TvTi: package GenVisR
GenVisR
updated 8.7 years ago by
zlskidmore
▴ 30 • written 8.7 years ago by
Bogdan
▴ 670
2
votes
5
replies
3.4k
views
GenVisR Installation error message
genvisR
9.7 years ago
Deep Adhya
▴ 20
13 results • Page
1 of 1
Recent ...
Replies
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
Answer: gene Set with high AUC score but no cells assigned to cell type
by
Kevin Blighe
★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction
by
Kevin Blighe
★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
Kevin Blighe
★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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