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genvisR
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
3.3 years ago
Amy_
• 0
3
votes
10
replies
4.3k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 2.2 years ago by
zlskidmore
▴ 30 • written 3.5 years ago by
abhisikta
• 0
0
votes
1
reply
1.8k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 3.6 years ago by
Hervé Pagès
16k • written 3.6 years ago by
Michel
• 0
0
votes
0
replies
2.9k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
3.6 years ago
e
• 0
0
votes
1
reply
1.7k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 5.2 years ago by
zlskidmore
▴ 30 • written 5.2 years ago by
Jeni
▴ 10
0
votes
1
reply
1.1k
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
6.2 years ago
sheneicechang
• 0
0
votes
0
replies
1.3k
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
6.3 years ago
sheneicechang
• 0
0
votes
1
reply
1.6k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 7.1 years ago by
zlskidmore
▴ 30 • written 7.2 years ago by
ZihaoXing
• 0
0
votes
1
reply
1.2k
views
Issues with lohSpec
genvisr
lohSpec
7.5 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.8k
views
Copy Number plot cnSpec - how to order samples
genvisr
7.6 years ago
cedric.vmdl
• 0
0
votes
4
replies
2.9k
views
GenVisR- cnSpec CNV plot
GenVisR
8.0 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.7k
views
an error in TvTi: package GenVisR
GenVisR
updated 8.9 years ago by
zlskidmore
▴ 30 • written 8.9 years ago by
Bogdan
▴ 670
2
votes
5
replies
3.4k
views
GenVisR Installation error message
genvisR
9.9 years ago
Deep Adhya
▴ 20
13 results • Page
1 of 1
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Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
JKim
• 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results
by
sup0903
• 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Votes
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
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