Showing : genvisr • reset
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GenVisR - adding on genomic positions to CovGen graph
GenVisR GenCov
19 months ago Amy_ • 0
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10
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error in package GenVisR while installing
GenVisR GenVis
updated 5 months ago by ▴ 30 • written 21 months ago by • 0
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1.1k
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Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 23 months ago by 16k • written 23 months ago by • 0
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1.5k
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How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR maftools
23 months ago e • 0
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1.0k
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Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants waterfall GenVisR
updated 3.5 years ago by ▴ 30 • written 3.5 years ago by ▴ 10
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696
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Adding layer to legend in waterfall plot
GenVisR ggplot2 waterfall
4.5 years ago sheneicechang • 0
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905
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
4.6 years ago sheneicechang • 0
0
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1
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1.1k
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how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr genvisr waterfall mutation
updated 5.4 years ago by ▴ 30 • written 5.5 years ago by • 0
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Issues with lohSpec
genvisr lohSpec
5.8 years ago dharia.priyadarshani • 0
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1.1k
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Copy Number plot cnSpec - how to order samples
genvisr
5.9 years ago cedric.vmdl • 0
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1.9k
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GenVisR- cnSpec CNV plot
GenVisR
6.3 years ago daijieqiong ▴ 10
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2
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1.2k
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an error in TvTi: package GenVisR
GenVisR
updated 7.2 years ago by ▴ 30 • written 7.2 years ago by ▴ 670
2
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5
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2.7k
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GenVisR Installation error message
genvisR
8.2 years ago • updated 8.1 years ago Deep Adhya ▴ 20
13 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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