Showing : getSeq • reset
1
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3
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2.0k
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Does there exists a getSeq like function for ranges that wrap around end to start ?
circulargenome ORFik getSeq
3.7 years ago • updated 3.6 years ago hauken_heyken ▴ 80
0
votes
1
reply
859
views
Error Message in signeR
signeR getseq
updated 5.5 years ago by ▴ 10 • written 5.5 years ago by • 0
4
votes
1
reply
1.8k
views
Getting "negative length vectors are not allowed" error in BSgenome::getSeq
BSgenome getSeq
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 110
1
vote
2
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1.5k
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Error in BSGenome "getSeq" function
R bsgenome getseq
updated 7.9 years ago by 67k • written 7.9 years ago by • 0
3
votes
1
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5.7k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset getseq
updated 8.3 years ago by 16k • written 8.3 years ago by ▴ 80
1
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3
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1.6k
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NAs values when importing BED file using import function
rtracklayer NA BED getseq
9.0 years ago Dimitris Polychronopoulos ▴ 80
0
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2
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2.4k
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BSGenome::getSeq gives error: Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append)
bsgenome getseq
updated 9.0 years ago by 25k • written 9.0 years ago by • 0
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Comment: [How to construct a model.matrix ] by kyj2226 • 0
Thanks to you, I learn a lot. Many thanks, Yujin.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
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Answer: [How to construct a model.matrix ]
C: DESeq2 baseMean values for each sample
C: DESeq2 baseMean values for each sample
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
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