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getseq
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reset
1
vote
3
replies
2.1k
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Does there exists a getSeq like function for ranges that wrap around end to start ?
circulargenome
ORFik
getSeq
3.8 years ago
hauken_heyken
▴ 80
0
votes
1
reply
892
views
Error Message in signeR
signeR
getseq
updated 5.7 years ago by
renan.valieris
▴ 10 • written 5.7 years ago by
TRASA
• 0
4
votes
1
reply
1.9k
views
Getting "negative length vectors are not allowed" error in BSgenome::getSeq
BSgenome
getSeq
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
rubi
▴ 110
1
vote
2
replies
1.6k
views
Error in BSGenome "getSeq" function
R
bsgenome
getseq
updated 8.0 years ago by
James W. MacDonald
67k • written 8.0 years ago by
pm16057
• 0
3
votes
1
reply
5.8k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
TimothéeFlutre
▴ 80
1
vote
3
replies
1.6k
views
NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
9.2 years ago
Dimitris Polychronopoulos
▴ 80
0
votes
2
replies
2.4k
views
BSGenome::getSeq gives error: Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append)
bsgenome
getseq
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
dborgesrmit
• 0
7 results • Page
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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
by
James W. MacDonald
67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue
by
k.panov
• 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: MBDseq analysis using qsea package
by
Lukas
▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts
by
sindhuri
• 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: iam not able to do retrive data using GEOquery R package
by
James W. MacDonald
67k
Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…
Votes
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
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