Showing : glad • reset
0
votes
13
replies
1.9k
views
PWMscoreStartingAt and ambiguous subject seqs
Cancer Biostrings GLAD Cancer Biostrings GLAD
updated 12.0 years ago by 16k • written 12.0 years ago by ▴ 740
0
votes
13
replies
1.7k
views
problem with data processing in R
PROcess GLAD PROcess GLAD
updated 14.4 years ago by ★ 1.7k • written 14.4 years ago by ▴ 170
0
votes
8
replies
1.5k
views
Gene Selection
GLAD GLAD
updated 19.2 years ago by ▴ 210 • written 19.3 years ago by ▴ 310
0
votes
7
replies
1.8k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 16.6 years ago by ▴ 250 • written 16.6 years ago by ▴ 440
0
votes
7
replies
1.4k
views
problem to compute copy number with crlmm
GLAD crlmm GLAD crlmm
updated 14.5 years ago by ▴ 250 • written 14.5 years ago by ▴ 40
0
votes
6
replies
2.2k
views
HTqPCR
qPCR GO GLAD HTqPCR qPCR GO GLAD HTqPCR
updated 11.9 years ago by ★ 2.0k • written 11.9 years ago by ▴ 40
0
votes
4
replies
3.1k
views
retrieving mRNA sequences via biomaRt
GLAD biomaRt GLAD biomaRt
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 30
0
votes
4
replies
1.5k
views
Positive correlation between dye-swap technical replicates
Normalization Clustering probe limma GLAD Normalization Clustering probe limma GLAD
14.3 years ago Michał Góralski ▴ 40
0
votes
4
replies
1.3k
views
Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 360
0
votes
4
replies
1.1k
views
Discrepancy on results from gcrma function and justGCRMA
gcrma GLAD gcrma GLAD
updated 14.3 years ago by 65k • written 14.3 years ago by ★ 2.0k
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
0
votes
4
replies
1.4k
views
HTqPCR problems
qPCR GO Preprocessing GLAD HTqPCR qPCR GO Preprocessing GLAD HTqPCR
updated 11.8 years ago by ▴ 340 • written 11.8 years ago by ★ 2.0k
0
votes
3
replies
2.0k
views
Diffbind: Binding Affinity Heatmap
Sequencing GO Clustering GLAD edgeR DESeq DiffBind Sequencing GO Clustering GLAD edgeR
10.7 years ago Rory Stark ★ 5.2k
0
votes
3
replies
1.3k
views
GLAD crashes when built with gcc-4.8
GLAD GLAD
updated 10.4 years ago by 25k • written 10.4 years ago by ▴ 70
0
votes
3
replies
1.6k
views
Merging various panel for flow cytometry
GLAD flowCore flowViz GLAD flowCore flowViz
updated 11.4 years ago by ★ 1.3k • written 11.4 years ago by ▴ 160
0
votes
2
replies
2.2k
views
problem installing 'GLAD' package
cdf GLAD cdf GLAD
13.4 years ago Shenglin Zheng ▴ 20
0
votes
2
replies
842
views
Help with the weaver example from limma package
Annotation GLAD Annotation GLAD
updated 12.9 years ago by 50k • written 12.9 years ago by ▴ 20
0
votes
2
replies
1.4k
views
error in loading GLAD package
GLAD GLAD
updated 12.5 years ago by 25k • written 12.5 years ago by ▴ 110
0
votes
2
replies
881
views
Re: Better mailing list archives {was "Searching BioC .."}
GLAD GLAD
20.6 years ago Warnes, Gregory R ▴ 460
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votes
2
replies
1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
0
votes
2
replies
1.5k
views
DESeq - Estimating Dispersion with Technical Replicates
GLAD DESeq GLAD DESeq
updated 11.6 years ago by ★ 13k • written 11.6 years ago by ▴ 20
0
votes
2
replies
1.1k
views
hyperGTest and HyperGParams
Microarray Annotation GLAD Category Microarray Annotation GLAD Category
updated 16.5 years ago by ★ 5.5k • written 16.5 years ago by ▴ 500
0
votes
2
replies
1.3k
views
Adding a text label to the classvec colour bar in heatplot
Clustering Cancer graph GLAD Clustering Cancer graph GLAD
updated 15.8 years ago by ▴ 460 • written 15.8 years ago by ★ 6.5k
0
votes
2
replies
1.3k
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation mouse4302 simpleaffy GLAD Annotation mouse4302 simpleaffy GLAD
updated 15.3 years ago by 65k • written 15.3 years ago by ▴ 40
1
vote
1
reply
2.0k
views
multiple threads on QuasR
Alignment GLAD QuasR Alignment GLAD QuasR
11.1 years ago • updated 11.0 years ago Michael Stadler ▴ 350
0
votes
1
reply
1.7k
views
Issue of installing the GLAD package
GLAD GLAD
updated 10.9 years ago by 1.6k • written 10.9 years ago by ★ 13k
0
votes
1
reply
1.0k
views
beadarray library: perBeadFile
GLAD beadarray GLAD beadarray
updated 10.7 years ago by ★ 6.5k • written 10.7 years ago by ▴ 10
0
votes
1
reply
795
views
error message from GLAD
CGH GLAD CGH GLAD
updated 18.7 years ago by ▴ 20 • written 18.7 years ago by ▴ 30
0
votes
1
reply
1.1k
views
Normalized data in expresso and Expression Console differ
Normalization GLAD Normalization GLAD
updated 14.9 years ago by ★ 3.9k • written 14.9 years ago by ▴ 10
0
votes
1
reply
868
views
[Rocky] - LIMMA to identify deferentially expressed genes
affy limma GLAD affy limma GLAD
updated 12.3 years ago by 21k • written 12.3 years ago by ▴ 30
0
votes
1
reply
1.3k
views
write.XStringView/write.XStringSet highly inefficient (solved)
Cancer BSgenome PROcess GLAD BSgenome Cancer BSgenome PROcess GLAD BSgenome
updated 13.8 years ago by ★ 13k • written 13.8 years ago by ▴ 550
0
votes
1
reply
907
views
limma background correction
limma GLAD limma GLAD
updated 15.7 years ago by 50k • written 15.7 years ago by ▴ 340
0
votes
1
reply
1.1k
views
Help with GenePix files
Normalization marray GLAD Normalization marray GLAD
updated 17.2 years ago by ★ 7.4k • written 17.2 years ago by ▴ 310
0
votes
1
reply
1.4k
views
[Rocky] - Clarification for finding SNPs at 3'UTR, 5'UTR, CDS genomic regions
SNP Cancer GLAD SNP Cancer GLAD
updated 13.3 years ago by 16k • written 13.3 years ago by ▴ 30
0
votes
1
reply
1.6k
views
[Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values
Cancer Biostrings GLAD Cancer Biostrings GLAD
updated 12.6 years ago by ★ 11k • written 12.6 years ago by 16k
0
votes
1
reply
600
views
questions about limma
Microarray limma GLAD Microarray limma GLAD
updated 19.7 years ago by 65k • written 19.7 years ago by ▴ 10
0
votes
1
reply
982
views
Re: Bioconductor digest, Vol 1 #134 - 5 msgs
cdf multtest affy GLAD cdf multtest affy GLAD
updated 21.6 years ago by ★ 2.3k • written 21.6 years ago by ▴ 10
0
votes
1
reply
879
views
Rgraphviz windows version incompatible with current Graphviz
Rgraphviz PROcess GLAD Rgraphviz PROcess GLAD
updated 13.0 years ago by 25k • written 13.0 years ago by ▴ 10
0
votes
1
reply
1.3k
views
how to do paired t-tests for multiple subgroups [was: warnings or potential problems in limma procedure]
Cancer limma GLAD Category Cancer limma GLAD Category
updated 13.1 years ago by ▴ 100 • written 13.0 years ago by 50k
0
votes
1
reply
1.3k
views
edgeR glm fit error
GO GLAD edgeR GO GLAD edgeR
13.2 years ago Gordon Smyth 50k
0
votes
1
reply
846
views
Newbie question
GLAD GLAD
updated 13.3 years ago by 65k • written 13.3 years ago by ▴ 30
0
votes
1
reply
1.6k
views
Design matrix for time course analysis with maSigPro
GLAD maSigPro GLAD maSigPro
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 10
0
votes
1
reply
1.6k
views
Rgraphviz installing problem
Rgraphviz GLAD Rgraphviz GLAD
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Help needed with aroma.affymetrix package to extract copy-numbers
Normalization cdf GLAD Normalization cdf GLAD
updated 16.2 years ago by ★ 2.4k • written 16.2 years ago by ▴ 270
0
votes
0
replies
1.2k
views
DiffBind (Please add me to the Dropbox containing the vignette data)
GLAD edgeR DiffBind DESeq2 GLAD edgeR DiffBind DESeq2
10.1 years ago Rory Stark ★ 5.2k
0
votes
0
replies
1.1k
views
browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
15.3 years ago Michael Lawrence ▴ 620
0
votes
0
replies
1.2k
views
error in plotKEGGGraph
Pathways GLAD KEGGgraph Pathways GLAD KEGGgraph
13.6 years ago Robert M. Flight ▴ 280
0
votes
0
replies
877
views
HTqPCR question
Microarray limma GLAD HTqPCR Microarray limma GLAD HTqPCR
13.5 years ago Heidi Dvinge ★ 2.0k
0
votes
0
replies
1.1k
views
question regarding ChIPPeakAnno use
Annotation annotate GLAD ChIPpeakAnno Annotation annotate GLAD ChIPpeakAnno
11.6 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
947
views
affy, how to define the normalization method that works with my data
Normalization affy GLAD Normalization affy GLAD
19.8 years ago Dipl.-Ing. Johannes Rainer ▴ 430
50 results • Page 1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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