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globaltest
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0
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2
replies
1.0k
views
I want to use global test.
gene
r
clst
rpy
globaltest
3.1 years ago
Kim
• 0
0
votes
0
replies
888
views
Testing a gene set with globaltest
globaltest
6.9 years ago
Lluís Revilla Sancho
▴ 730
0
votes
0
replies
906
views
User defined gene or metabolite set in globaltest
globaltest
gene set
7.4 years ago
the_august
• 0
0
votes
0
replies
1.1k
views
Yeast ORF gene set analysis with globaltest (gtKEGG)
globaltest
saccharomyces cerevisiae
gtKEGG
KEGG
gene set analysis
7.8 years ago
Rebecca Ong
• 0
0
votes
3
replies
2.5k
views
Annotation in ExpressionSet object
ExpressionSet
globaltest
7.9 years ago
NS
▴ 60
0
votes
0
replies
1.0k
views
How to use CP:REACTOME subcategory under category C2 in Broad list (globaltest)
globaltest
8.1 years ago
Aditya Saxena
▴ 10
0
votes
2
replies
2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure
Cancer
Biobase
tkWidgets
globaltest
BiocInstaller
BiocGenerics
Cancer
updated 11.1 years ago by
Martin Morgan
25k • written 11.1 years ago by
Shields, Rusty IMS
▴ 40
0
votes
0
replies
969
views
globaltest 5.6.1 bug fix
Survival
globaltest
Survival
globaltest
12.8 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
0
replies
993
views
globaltest 5.0.2
Survival
globaltest
Survival
globaltest
14.3 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
0
replies
780
views
bug fix in globaltest
globaltest
globaltest
14.4 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
1
reply
1.1k
views
globaltest mulitple testing correction
Pathways
globaltest
Pathways
globaltest
updated 15.5 years ago by
Claus Mayer
▴ 340 • written 15.5 years ago by
mpg33@drexel.edu
▴ 90
0
votes
1
reply
1.1k
views
global test multiple testing correction
Pathways
globaltest
Pathways
globaltest
updated 15.5 years ago by
DEBASHIS GHOSH
▴ 40 • written 15.5 years ago by
Michael Gormley
▴ 60
0
votes
0
replies
3.1k
views
topGO enrichment using ensembl gene list
Microarray
Annotation
GO
PROcess
globaltest
topGO
Microarray
Annotation
GO
PROcess
topGO
16.1 years ago
Adrian Alexa
▴ 400
0
votes
1
reply
1.2k
views
globaltest - multinomial model
Survival
affy
vsn
limma
globaltest
affyio
Survival
affy
vsn
limma
globaltest
affyio
updated 16.7 years ago by
Goeman, J.J. MSTAT
▴ 150 • written 16.7 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
1.0k
views
globaltest
Pathways
globaltest
Pathways
globaltest
updated 17.1 years ago by
Oosting, J. PATH
▴ 550 • written 17.1 years ago by
Caroline Reiff
▴ 40
0
votes
8
replies
2.0k
views
AnnBuilder and Kegg
Pathways
GO
Survival
Cancer
Organism
annotate
affydata
vsn
AnnBuilder
globaltest
GO
vsn
updated 17.4 years ago by
David Lapointe
▴ 190 • written 17.4 years ago by
John Zhang
★ 2.9k
0
votes
0
replies
1.1k
views
globaltest: pairwise design?
globaltest
globaltest
17.6 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
0
replies
820
views
geneplot problem
GO
globaltest
GO
globaltest
18.0 years ago
Dario Greco
▴ 310
0
votes
0
replies
932
views
globaltest covariates problem
globaltest
globaltest
18.3 years ago
Dario Greco
▴ 310
0
votes
3
replies
1.5k
views
R: Pathway Information
Genetics
Pathways
Cancer
probe
globaltest
Genetics
Pathways
Cancer
probe
globaltest
updated 18.9 years ago by
Alberto Goldoni
▴ 360 • written 18.9 years ago by
John Zhang
★ 2.9k
0
votes
0
replies
1.1k
views
globaltest procedure
Pathways
Survival
globaltest
Pathways
Survival
globaltest
19.1 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
1
reply
1.1k
views
Globaltest
globaltest
globaltest
updated 19.2 years ago by
Oosting, J. PATH
▴ 550 • written 19.2 years ago by
Jiuzhou song
▴ 100
0
votes
2
replies
1.7k
views
Installation Problem on OS X
GO
geneplotter
graph
Rgraphviz
pamr
globaltest
GO
geneplotter
graph
Rgraphviz
pamr
updated 19.4 years ago by
Marcus Davy
▴ 680 • written 19.4 years ago by
David Rocke
▴ 10
0
votes
0
replies
902
views
new version of globaltest
globaltest
globaltest
20.1 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
0
replies
1.1k
views
Package globaltest
GO
globaltest
GO
globaltest
21.1 years ago
Jeff Gentry
★ 3.9k
25 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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