Bioconductor Go enrichment

Showing : go enrichment • reset

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4.3k

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clusterProfiler GO GO enrichment genesetenrichment

updated 7 months ago by jandrade • 0 • written 6.9 years ago by Huang, Lei [BSD] - CRI ▴ 20

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2.5k

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go enrichment gene ontology goseq go

5.1 years ago Raito92 ▴ 60

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1.1k

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gosemsim go enrichment go semantic similarity

5.9 years ago nooshin ▴ 300

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2.2k

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rnaseq topgo go enrichment

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by jgg • 0

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2.9k

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clusterprofiler go enrichment functional enrichment

updated 6.0 years ago by Guangchuang Yu ★ 1.2k • written 6.0 years ago by Jack ▴ 20

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1.3k

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topgo ks score kolmogorov-smirnov test go enrichment

updated 6.4 years ago by Lluís Revilla Sancho ▴ 760 • written 6.4 years ago by eagomezc • 0

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1.1k

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goseq go enrichment

6.4 years ago mart1139 • 0

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1.7k

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chipseq go enrichment clusterprofiler

updated 6.7 years ago by Guangchuang Yu ★ 1.2k • written 6.7 years ago by Javier Pérez Florido ▴ 840

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3.9k

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deseq2 goseq rnaseq go enrichment differential gene expression

updated 6.8 years ago by Michael Love 42k • written 6.8 years ago by josef.oeckl • 0

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2.3k

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org.dm.eg.db gene ontology go enrichment annotation NOT

updated 7.7 years ago by Valerie Obenchain ★ 6.8k • written 7.7 years ago by triZZla • 0

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1.2k

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go enrichment topgo d.ananassae

updated 8.3 years ago by James W. MacDonald 67k • written 8.3 years ago by koeniger ▴ 10

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2.4k

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bacteria GO enrichment

updated 9.3 years ago by Marc Carlson ★ 7.2k • written 9.3 years ago by ksw ▴ 20

12 results • Page 1 of 1

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Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for all of your help! I really appreciate it!

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by Gordon Smyth 51k

Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

Thansk Herve', I will try. For reference this is the parallelization implementation of zellkonverter, to save anndata from SCE https://gi…

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Jason • 0

Any update on the resolution to this? I'm having the same issue with another species.

Votes

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

biomaRt rnorvegicus_gene_ensembl not available anymore

A: Does edgeR need to specify reference group?

Awards • All

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20