Bioconductor Go enrichment

Showing : go enrichment • reset

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3.7k

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clusterProfiler GO GO enrichment genesetenrichment

updated 6 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

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2.1k

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org.dm.eg.db gene ontology go enrichment annotation NOT

updated 7.1 years ago by Valerie Obenchain ★ 6.8k • written 7.1 years ago by triZZla • 0

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deseq2 goseq rnaseq go enrichment differential gene expression

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by josef.oeckl • 0

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1.5k

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chipseq go enrichment clusterprofiler

updated 6.1 years ago by Guangchuang Yu ★ 1.2k • written 6.1 years ago by Javier Pérez Florido ▴ 840

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1.1k

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go enrichment topgo d.ananassae

updated 7.8 years ago by James W. MacDonald 65k • written 7.8 years ago by koeniger ▴ 10

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1.2k

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topgo ks score kolmogorov-smirnov test go enrichment

updated 5.8 years ago by Lluís Revilla Sancho ▴ 730 • written 5.8 years ago by eagomezc • 0

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1.9k

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rnaseq topgo go enrichment

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by jgg • 0

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2.4k

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clusterprofiler go enrichment functional enrichment

updated 5.5 years ago by Guangchuang Yu ★ 1.2k • written 5.5 years ago by Jack • 0

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2.1k

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bacteria GO enrichment

updated 8.7 years ago by Marc Carlson ★ 7.2k • written 8.7 years ago by ksw ▴ 20

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2.2k

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go enrichment gene ontology goseq go

4.6 years ago Raito92 ▴ 60

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936

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goseq go enrichment

5.8 years ago mart1139 • 0

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994

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gosemsim go enrichment go semantic similarity

5.4 years ago nooshin ▴ 300

12 results • Page 1 of 1

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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