Bioconductor Go enrichment

Showing : go enrichment • reset

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3.7k

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clusterProfiler GO GO enrichment genesetenrichment

updated 5 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

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2.1k

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org.dm.eg.db gene ontology go enrichment annotation NOT

updated 7.1 years ago by Valerie Obenchain ★ 6.8k • written 7.1 years ago by triZZla • 0

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3.6k

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deseq2 goseq rnaseq go enrichment differential gene expression

updated 6.2 years ago by Michael Love 41k • written 6.2 years ago by josef.oeckl • 0

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1.5k

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chipseq go enrichment clusterprofiler

updated 6.1 years ago by Guangchuang Yu ★ 1.2k • written 6.1 years ago by Javier Pérez Florido ▴ 840

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1.1k

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go enrichment topgo d.ananassae

updated 7.8 years ago by James W. MacDonald 65k • written 7.8 years ago by koeniger ▴ 10

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1.2k

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topgo ks score kolmogorov-smirnov test go enrichment

updated 5.8 years ago by Lluís Revilla Sancho ▴ 730 • written 5.8 years ago by eagomezc • 0

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1.9k

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rnaseq topgo go enrichment

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by jgg • 0

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2.3k

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clusterprofiler go enrichment functional enrichment

updated 5.5 years ago by Guangchuang Yu ★ 1.2k • written 5.5 years ago by Jack • 0

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2.1k

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bacteria GO enrichment

updated 8.7 years ago by Marc Carlson ★ 7.2k • written 8.7 years ago by ksw ▴ 20

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2.1k

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go enrichment gene ontology goseq go

4.6 years ago Raito92 ▴ 60

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931

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goseq go enrichment

5.8 years ago mart1139 • 0

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992

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gosemsim go enrichment go semantic similarity

5.4 years ago nooshin ▴ 300

12 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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