Showing : go • reset
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Microarray data normalization
Normalization GO Cancer probe affy Normalization GO Cancer probe affy
11.3 years ago Levi Waldron ▴ 80
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0
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2.6k
views
rhdf5 read/write concurrency surprise
GO rhdf5 PROcess GO rhdf5 PROcess
11.3 years ago Bernd Fischer ▴ 550
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1
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1.6k
views
DEXSeq continous variable in model
RNASeq GO DEXSeq DESeq2 RNASeq GO DEXSeq DESeq2
11.3 years ago Alex Gutteridge ▴ 650
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3
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1.6k
views
Goseq datasets
RNASeq GO goseq RNASeq GO goseq
11.3 years ago Eduardo Andres Leon ▴ 30
0
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9
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3.5k
views
frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 11.3 years ago by ▴ 830 • written 11.3 years ago by ★ 13k
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replies
930
views
'RankMerging' changes sample names
GO GO
11.3 years ago Guest User ★ 13k
0
votes
1
reply
1.1k
views
limma contrast.matrix and design with "common reference"
GO limma GO limma
updated 11.3 years ago by 68k • written 11.3 years ago by ★ 13k
0
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3
replies
1.6k
views
Is a subset of my arrays from degraded RNA?
Microarray GO Clustering affy affyPLM simpleaffy Microarray GO Clustering affy affyPLM
11.3 years ago Peter Davidsen ▴ 210
0
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1
reply
1.3k
views
Bioinformatics Minisymposium at the University of Dundee
GO GO
11.3 years ago Reema Singh ▴ 570
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votes
2
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1.8k
views
Rebuild GO.sqlite from GO.db using complete GO database
Annotation GO Organism Annotation GO Organism
updated 11.3 years ago by ★ 7.2k • written 11.3 years ago by ▴ 40
0
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1
reply
2.4k
views
Deseq for pairwise comparison among many pairs
GO DESeq GO DESeq
updated 11.3 years ago by 43k • written 11.3 years ago by ▴ 10
1
vote
2
replies
2.8k
views
Interaction term logFC
RNASeq GO DESeq2 RNASeq GO DESeq2
updated 11.3 years ago by 68k • written 11.3 years ago by ★ 13k
0
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1
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1.6k
views
DESeqs two-factor two-level, interaction is interested
Sequencing GO phyloseq DESeq2 Sequencing GO phyloseq DESeq2
11.4 years ago • updated 11.3 years ago Shucong Li ▴ 60
0
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2
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2.0k
views
LIMMA similarity of contrast matrix, F test and topTable
GO GO
updated 11.4 years ago by 68k • written 11.4 years ago by ▴ 180
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0
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1.5k
views
R hthgu133afrmavecs_1.1.0 error: row.effects should sum to zero
GO probe PROcess frma GO probe PROcess frma
11.4 years ago Matthew McCall ▴ 830
1
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2
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2.4k
views
DESeqs two-factor two-level, interaction is interested
Sequencing GO phyloseq DESeq2 Sequencing GO phyloseq DESeq2
updated 11.4 years ago by 43k • written 11.4 years ago by ▴ 60
0
votes
0
replies
1.4k
views
rhdf5 read/write concurrency surprise
GO rhdf5 PROcess GO rhdf5 PROcess
11.4 years ago Brad Friedman ▴ 40
0
votes
0
replies
1.8k
views
GO enrichment analysis for rice genes
GO GO
11.4 years ago Yong Li ▴ 50
0
votes
3
replies
3.6k
views
Error in validObject(.Object)
Microarray GO Microarray GO
updated 11.4 years ago by 68k • written 11.4 years ago by ▴ 50
1
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8
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4.5k
views
GRanges apply functions
GO annotate GO annotate
updated 11.4 years ago by ★ 4.2k • written 11.4 years ago by ▴ 380
0
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1
reply
1.1k
views
topGO genes associated with GO terms
Annotation GO Annotation GO
updated 11.4 years ago by ★ 13k • written 11.4 years ago by ★ 13k
0
votes
7
replies
2.2k
views
Approaches to building Rle sequences from ranges
GO convert GO convert
updated 11.4 years ago by ▴ 90 • written 11.4 years ago by ▴ 40
0
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1
reply
1.3k
views
loading/accessing older GO.db and org.Hs.eg.db data
Annotation GO AnnotationDbi Annotation GO AnnotationDbi
updated 11.4 years ago by ★ 7.2k • written 11.5 years ago by ★ 13k
0
votes
2
replies
2.6k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics GO Regression Cancer TranscriptDb Genetics GO Regression Cancer TranscriptDb
updated 11.5 years ago by ▴ 570 • written 11.5 years ago by 16k
0
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0
replies
1.8k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
11.5 years ago swarmqq@gmail.com ▴ 10
0
votes
2
replies
3.3k
views
DE analysis with reference transcriptome
Sequencing GO Organism edgeR DESeq EBSeq Sequencing GO Organism edgeR DESeq EBSeq
updated 11.5 years ago by 68k • written 11.5 years ago by ▴ 10
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4
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3.5k
views
Error: could not find function "plotPCA"
GO affycoretools KEGGREST GO affycoretools KEGGREST
updated 11.5 years ago by 43k • written 11.5 years ago by ▴ 50
0
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0
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1.2k
views
Thalassiosira pseudonana
Annotation Pathways GO Annotation Pathways GO
11.5 years ago nooshin ▴ 300
0
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1
reply
4.2k
views
ChIPseeker: Error in annotatePeak
Sequencing GO annotate ChIPseeker Sequencing GO annotate ChIPseeker
11.5 years ago António Miguel de Jesus Domingues ▴ 510
0
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0
replies
1.0k
views
How to specify Q75 for locfunc in DESeq2 estimateSizeFactors ? (Michael Love) (Simon Anders)
GO GO
11.5 years ago Schnell, Dan ▴ 30
0
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1
reply
2.1k
views
getBM and sqldf error - no such table
GO biomaRt GO biomaRt
updated 11.5 years ago by 68k • written 11.5 years ago by ★ 13k
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0
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1.3k
views
Longest continuous sequence from multiple alignment
GO ShortRead GO ShortRead
11.5 years ago Guest User ★ 13k
0
votes
2
replies
1.7k
views
dexseq fitDispersionFunction(ecs) error
GO DEXSeq GO DEXSeq
updated 11.6 years ago by ★ 1.9k • written 11.6 years ago by ▴ 550
0
votes
0
replies
1.9k
views
Ontology lack in goProfiles : no BP or CC just MF
GO goProfiles GO goProfiles
11.6 years ago Arnaud Mounier ▴ 40
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votes
5
replies
3.3k
views
use of voom function with attract package
Pathways GO attract Pathways GO attract
updated 11.6 years ago by 53k • written 11.6 years ago by ★ 13k
0
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1
reply
1.8k
views
fRMA- more issues with custom CDFs
GO probe frma GO probe frma
updated 11.6 years ago by ▴ 830 • written 11.6 years ago by ▴ 110
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1
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2.4k
views
It works! RE: So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 11.6 years ago by ▴ 570 • written 11.6 years ago by ▴ 220
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1
reply
901
views
R 3.1.0 and dexseq 1.8.0
GO DEXSeq GO DEXSeq
updated 11.6 years ago by 25k • written 11.6 years ago by ▴ 550
0
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1
reply
1.9k
views
GOseq with ce6
GO Yeast Organism goseq genomes GO Yeast Organism goseq genomes
updated 11.6 years ago by ▴ 320 • written 11.6 years ago by ▴ 50
0
votes
0
replies
618
views
GOSemSim with mgoSim results changed based on the order of input GO terms
GO GO
11.6 years ago Guest User ★ 13k
0
votes
1
reply
1.2k
views
what is the difference between org.Hs.eg.dbGO2EG and org.Hs.eg.dbGO2ALLEGS?
GO GO
updated 11.6 years ago by ★ 7.2k • written 11.6 years ago by ▴ 10
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0
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1.4k
views
KEGG pathway analysis with ReportingTools
Pathways GO ReportingTools Pathways GO ReportingTools
11.6 years ago Mayte Suarez-Farinas ▴ 510
0
votes
1
reply
1.3k
views
RamiGO package function getAmigoTree broken
GO RamiGO GO RamiGO
updated 11.6 years ago by ★ 8.2k • written 11.6 years ago by ▴ 120
0
votes
0
replies
2.3k
views
IdeogramTrack and bigWig file errors in Gviz
GO Network rtracklayer CAMERA Gviz GO Network rtracklayer CAMERA Gviz
11.6 years ago Robert Ivanek ▴ 750
0
votes
1
reply
2.1k
views
So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 11.6 years ago by ▴ 570 • written 11.6 years ago by ▴ 220
0
votes
0
replies
1.3k
views
queries re Voom + Limma for RNA-seq data
Microarray Normalization GO limma Microarray Normalization GO limma
11.6 years ago Gordon Smyth 53k
0
votes
5
replies
2.5k
views
Rsamtools filtering bam file: RE: MEDIPS.createSet error
GO BSgenome BSgenome Rsamtools genomes MEDIPS GO BSgenome BSgenome Rsamtools genomes
updated 11.6 years ago by 25k • written 11.6 years ago by ▴ 220
1
vote
3
replies
2.7k
views
views on Rle using GRanges object
RNASeq Coverage GO Cancer bridge rtracklayer IRanges RNASeq Coverage GO Cancer bridge
updated 11.6 years ago by 16k • written 11.6 years ago by ★ 11k
0
votes
2
replies
2.0k
views
Computing normalized counts for exons in edgeR
GO edgeR GO edgeR
updated 11.6 years ago by ★ 3.6k • written 11.6 years ago by ▴ 60
0
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0
replies
1.6k
views
Any COG enrichment tools?
GO topGO GO topGO
11.6 years ago biotech ▴ 160
1,936 results • Page 5 of 39
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Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by James W. MacDonald 68k
Note that `S4Vectors` contains source code, so you will also need to [install RTools first][1]. [1]: https://cran.r-project.org/bin/win…
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Our windows binaries are currently lagging behind as we are currently do not have a windows builder. If you are on windows you can try ins…
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Can you please provide your `sessionInfo()` after doing `library("S4Vectors")`
Comment: VariantAnnotation does escape = within header string quotes by Daniel Cameron ▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data by Alexander • 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
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Popular Question to edward.esiribloom • 0
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