Showing : go • reset
0
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1
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1.0k
views
GO-term comparison between two genomic regions
topgo GO annotation
updated 10.2 years ago by 68k • written 10.2 years ago by • 0
1
vote
2
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1.5k
views
Gene Ontology Problems
software error go microarray oligo hugene20st
updated 10.3 years ago by 68k • written 10.3 years ago by ▴ 10
0
votes
2
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1.5k
views
GO annotation missing in org.EcSakai.eg.db?
org.EcSakai.eg.db Annotation go clusterProfiler
updated 10.3 years ago by 68k • written 10.3 years ago by ★ 1.2k
0
votes
2
replies
4.4k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 10.3 years ago by • 0 • written 12.6 years ago by ★ 8.2k
0
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1
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1.8k
views
GAGE/Pathview now support 3000 KEGG species and 19 GO species (with BioC 2.14)
GO gage pathview GO gage pathview
updated 10.4 years ago by ▴ 10 • written 11.4 years ago by ★ 1.6k
0
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2
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1.6k
views
makeOrgPackage: possible to add option to allow GO terms now in GO.db?
annotationforge makeorgpackage go
10.4 years ago Keith Hughitt ▴ 180
0
votes
3
replies
2.7k
views
enrichGO() for unsupported organisms - library(clusterProfiler)
clusterProfiler go annotation
10.4 years ago cristina della beffa ▴ 30
5
votes
11
replies
2.4k
views
Appropriate methodologies for using various inputs(GOs, gene-sets) for mroast testing
limma mroast GSEA GO illumina human ht-12 v4
updated 10.4 years ago by ★ 29k • written 10.4 years ago by ▴ 840
0
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0
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1.7k
views
Re: GenesAnswers for Arabidopsis!
GeneAnswers annotation Arabidopsis GO
10.4 years ago lhuang7 ▴ 50
0
votes
4
replies
2.5k
views
GOterm semantic similarity with non-reference organism
gosemsim go gene ontology
10.5 years ago cpcantalapiedra • 0
0
votes
0
replies
912
views
Trouble to load data with basicProfile
go software error annotation
10.6 years ago ncervea • 0
9
votes
8
replies
23k
views
Integrating DESeq2 and TopGO for Enrichment
go deseq2 rnaseq r
updated 10.7 years ago by ▴ 610 • written 10.7 years ago by ▴ 20
1
vote
1
reply
6.1k
views
Reduce the redundancy of enriched GO terms
GO topgo genesetenrichment
updated 10.8 years ago by ★ 1.6k • written 10.8 years ago by ▴ 150
0
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0
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1.6k
views
mgsa vignette gives an error with the full yeast GAF
mgsa GO yeast software error
10.8 years ago nmcglincy • 0
3
votes
1
reply
1.6k
views
ComBat crash/problem
GO GO
updated 10.8 years ago by ▴ 10 • written 11.5 years ago by ★ 3.0k
5
votes
2
replies
2.2k
views
How to get genes within a GO category of 'GOstat' results?
GO
updated 10.8 years ago by 53k • written 11.2 years ago by ▴ 310
0
votes
3
replies
2.9k
views
topGO - Two-tailed (depletion/enrichment) analysis?
topgo go
updated 10.9 years ago by 53k • written 10.9 years ago by ▴ 10
0
votes
6
replies
2.7k
views
hyperGTest interpretation of 'under' and finding all Entrez associated with a GO term
Annotation GO gostats
updated 10.9 years ago by 53k • written 13.0 years ago by ▴ 70
2
votes
2
replies
2.6k
views
GO offspring consistency
annotation GO graph gene ontology
updated 10.9 years ago by 1.6k • written 10.9 years ago by • 0
4
votes
3
replies
3.0k
views
ggbio error: Objects of type OrganismDb not supported by autoplot
GO OrganismDb ggbio GO OrganismDb ggbio
updated 10.9 years ago by ▴ 50 • written 11.2 years ago by ▴ 120
0
votes
2
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1.9k
views
ReportingTools problem with GO report
Annotation GO Annotation GO
updated 10.9 years ago by • 0 • written 11.5 years ago by ★ 1.5k
1
vote
3
replies
2.3k
views
GO.db package GOBPPARENTS
go annotation
updated 11.0 years ago by ★ 7.2k • written 11.0 years ago by ▴ 20
2
votes
2
replies
1.7k
views
How to remove IEA genes from list of GO terms?
go annotation organismdb
updated 11.1 years ago by 68k • written 11.1 years ago by ★ 4.1k
4
votes
4
replies
9.2k
views
Packages for GO and KEGG analysis on RNAseq data
GO gage goseq KEGG
updated 11.1 years ago by 53k • written 11.2 years ago by ▴ 120
4
votes
3
replies
5.7k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO BLAST annotation
updated 11.1 years ago by ★ 7.2k • written 11.1 years ago by ▴ 270
1
vote
0
replies
904
views
GO analysis representation with RamiGO
go rnaseq
updated 11.1 years ago by 1.6k • written 11.1 years ago by ▴ 120
4
votes
3
replies
3.8k
views
Select the annotation level during GO enrichment
topgo gostats go
updated 11.1 years ago by 68k • written 11.1 years ago by ▴ 80
3
votes
9
replies
3.6k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles AnnotationForge Bimap GO
11.1 years ago artur ▴ 80
2
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1
reply
3.1k
views
topGO: how to visualize gene in GO enriched categories?
GO
updated 11.1 years ago by ▴ 610 • written 11.2 years ago by ▴ 80
3
votes
3
replies
9.5k
views
error: "'names' attribute [16] must be the same length as the vector [2]", using Making Organism packages use of makeOrgPackage()
annotationforge Annotation GO
updated 11.1 years ago by ★ 7.2k • written 11.2 years ago by ▴ 80
0
votes
2
replies
2.4k
views
HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO hgu133plus2 cdf affy limma
updated 11.2 years ago by ★ 13k • written 11.2 years ago by ★ 13k
0
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0
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1.2k
views
[Bioc-devel] AnnotatioDbi Biostrings load order breaks GenomicFiles summary method
GO Biostrings rtracklayer GenomicRanges BiocParallel GenomicFiles
11.2 years ago Dan Tenenbaum ★ 8.2k
1
vote
0
replies
1.5k
views
how to fetch GO categories from Chinese hamster genome
GO Category goseq
11.2 years ago upendra kumar devisetty ▴ 30
0
votes
1
reply
1.6k
views
Organism annotation package created with makeOrgPackage doesn't install properly
GO
updated 11.2 years ago by 68k • written 11.2 years ago by ★ 13k
0
votes
1
reply
1.1k
views
insertion site detection
GO
updated 11.2 years ago by ★ 3.6k • written 11.2 years ago by ▴ 220
0
votes
0
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2.6k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
11.2 years ago Luo Weijun ★ 1.6k
0
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0
replies
2.1k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
11.2 years ago Guest User ★ 13k
0
votes
1
reply
2.6k
views
Converting .gpr files to .csv files
Microarray GO convert
updated 11.2 years ago by 68k • written 11.2 years ago by ★ 13k
0
votes
3
replies
1.8k
views
edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Sequencing Alignment GO edgeR DESeq2
updated 11.2 years ago by ★ 7.9k • written 11.2 years ago by ▴ 60
0
votes
4
replies
2.1k
views
hugene10sttranscriptclusterACCNUM has no mappings
Annotation GO ChipDb probe
updated 11.2 years ago by ▴ 20 • written 11.2 years ago by ★ 7.2k
0
votes
0
replies
1.5k
views
edgeR: mixing technical replicates from Illumina HiSeq and MiSeq
Sequencing Alignment GO edgeR DESeq2 Sequencing Alignment GO edgeR DESeq2
11.2 years ago Gordon Smyth 53k
0
votes
1
reply
1.2k
views
hugene10sttranscriptclusterACCNUM has no mappings
GO probe GO probe
updated 11.2 years ago by 68k • written 11.2 years ago by ▴ 20
0
votes
1
reply
1.4k
views
DESeq
GO DESeq GO DESeq
updated 11.2 years ago by ★ 13k • written 11.2 years ago by ★ 13k
0
votes
1
reply
1.9k
views
Genes2GO and suggestions to make it faster
Annotation GO PROcess biomaRt Annotation GO PROcess biomaRt
updated 11.2 years ago by 21k • written 11.2 years ago by ▴ 20
0
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0
replies
1.1k
views
Announcing Bioconductor's youTube Channel
GO GO
11.2 years ago Sonali Arora ▴ 390
0
votes
0
replies
1.9k
views
GAGE/Pathview analysis data preparation
GO gage pathview GO gage pathview
11.2 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
1.7k
views
GO enrichment
GO Category goseq GO Category goseq
11.2 years ago Guest User ★ 13k
1
vote
2
replies
3.3k
views
"Normalising" GRanges coverage object
Coverage GO Gviz Coverage GO Gviz
updated 11.3 years ago by ★ 7.9k • written 11.3 years ago by ▴ 350
0
votes
1
reply
1.3k
views
spike-in normalization with NormiR
Normalization GO probe Normalization GO probe
updated 11.3 years ago by 68k • written 11.3 years ago by ★ 13k
0
votes
2
replies
1.1k
views
ChIPpeakAnno for overlapping gene features
GO ChIPpeakAnno GO ChIPpeakAnno
updated 11.3 years ago by ▴ 10 • written 11.3 years ago by ★ 4.3k
1,936 results • Page 4 of 39
Recent ...
Replies
Comment: Failure to download resources (MeSHDb) from AnnotationHub by Steve Lianoglou ★ 13k
That fixed it, thanks Lori!
Comment: Suppress warning in RHDF5 write by nicolas.lhuillier • 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Answer: Suppress warning in RHDF5 write by James W. MacDonald 68k
``` > fun <- function() message("this is a message") > fun() this is a message > suppressMessages(fun()) > ```
Answer: Failure to download resources (MeSHDb) from AnnotationHub by shepherl 4.2k
apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
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Popular Question to edward.esiribloom • 0
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