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goSlim
•
reset
0
votes
8
replies
2.0k
views
GOslim missing GO term
GO.db
GOslim
2.1 years ago
amanda
• 0
3
votes
4
replies
3.1k
views
GSEABase - Map gene/transcript IDs to GOslims?
gseabase
go
gene ontology
goslim
5.9 years ago • updated 2.9 years ago
samwhite
▴ 20
7
votes
9
replies
5.5k
views
GSEABase - View/extract GO terms mapped to each GOslim
go
GSEABase
GOslim
gene ontology
5.9 years ago • updated 2.8 years ago
samwhite
▴ 20
0
votes
2
replies
2.2k
views
Resolved- GSEAbase: goSlim function, pb with counts
GSEA
GO
goSlim
8.3 years ago
maeva.mollion
• 0
1
vote
1
reply
1.7k
views
Obtaining Go slim terms from biomaRt
biomaRt
goslim
go
updated 9.2 years ago by
Mike Smith
★ 6.6k • written 9.2 years ago by
rubi
▴ 110
0
votes
0
replies
1.8k
views
Create list of genes within each GOslim term
gene ontology
goslim
enrichment analysis
gene annotation
9.8 years ago
mirko
• 0
6 results • Page
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Answer: When to use edgeR or limma
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The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
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I updated the above answer today.
Answer: When to use edgeR or limma
by
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68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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