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goSlim
•
reset
0
votes
8
replies
1.7k
views
GOslim missing GO term
GO.db
GOslim
22 months ago
amanda
• 0
3
votes
4
replies
2.9k
views
GSEABase - Map gene/transcript IDs to GOslims?
gseabase
go
gene ontology
goslim
5.6 years ago • updated 2.6 years ago
samwhite
▴ 20
7
votes
9
replies
5.2k
views
GSEABase - View/extract GO terms mapped to each GOslim
go
GSEABase
GOslim
gene ontology
5.6 years ago • updated 2.5 years ago
samwhite
▴ 20
0
votes
2
replies
2.1k
views
Resolved- GSEAbase: goSlim function, pb with counts
GSEA
GO
goSlim
8.1 years ago
maeva.mollion
• 0
1
vote
1
reply
1.6k
views
Obtaining Go slim terms from biomaRt
biomaRt
goslim
go
updated 8.9 years ago by
Mike Smith
★ 6.6k • written 8.9 years ago by
rubi
▴ 110
0
votes
0
replies
1.7k
views
Create list of genes within each GOslim term
gene ontology
goslim
enrichment analysis
gene annotation
9.5 years ago
mirko
• 0
6 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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