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goSlim
•
reset
0
votes
8
replies
694
views
GOslim missing GO term
GO.db
GOslim
4 months ago
amanda
• 0
7
votes
9
replies
3.0k
views
GSEABase - View/extract GO terms mapped to each GOslim
go
GSEABase
GOslim
gene ontology
4.2 years ago • updated 13 months ago
samwhite
▴ 20
3
votes
4
replies
1.5k
views
GSEABase - Map gene/transcript IDs to GOslims?
gseabase
go
gene ontology
goslim
4.2 years ago • updated 13 months ago
samwhite
▴ 20
0
votes
2
replies
1.6k
views
Resolved- GSEAbase: goSlim function, pb with counts
GSEA
GO
goSlim
6.6 years ago
maeva.mollion
• 0
1
vote
1
reply
1.3k
views
Obtaining Go slim terms from biomaRt
biomaRt
goslim
go
updated 7.4 years ago by
Mike Smith
★ 6.5k • written 7.5 years ago by
rubi
▴ 110
0
votes
0
replies
1.3k
views
Create list of genes within each GOslim term
gene ontology
goslim
enrichment analysis
gene annotation
8.0 years ago
mirko
• 0
6 results • Page
1 of 1
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Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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