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goexpress
•
reset
9
votes
8
replies
5.0k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
8.2 years ago
Bogdan
▴ 670
6
votes
7
replies
4.4k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
9.5 years ago
martin.hoelzer
▴ 20
5
votes
4
replies
2.0k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 8.3 years ago by
kevin.rue
▴ 350 • written 8.3 years ago by
mforde84
▴ 20
3
votes
2
replies
1.6k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 9.5 years ago by
kevin.rue
▴ 350 • written 9.5 years ago by
willj
▴ 30
3
votes
6
replies
2.2k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 9.5 years ago by
kevin.rue
▴ 350 • written 9.5 years ago by
kcamnairb
▴ 10
2
votes
8
replies
1.7k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 2.5 years ago by
kevin.rue
▴ 350 • written 2.5 years ago by
grolo
• 0
2
votes
6
replies
3.0k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 9.1 years ago by
kevin.rue
▴ 350 • written 9.1 years ago by
martin.hoelzer
▴ 20
2
votes
4
replies
1.6k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
7.3 years ago
sina.zboron
• 0
1
vote
2
replies
1.6k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 5.5 years ago by
kevin.rue
▴ 350 • written 5.5 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.3k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
5.6 years ago
rezashiralmohammad
• 0
0
votes
4
replies
1.4k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 5.2 years ago by
kevin.rue
▴ 350 • written 5.2 years ago by
atorson
• 0
0
votes
2
replies
2.8k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
2.4 years ago
Chruut
• 0
0
votes
0
replies
607
views
GOexpress pvalue and gene sets
GOexpress
3.2 years ago
jms2520
▴ 10
0
votes
3
replies
4.4k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 8.9 years ago by
kevin.rue
▴ 350 • written 9.0 years ago by
Darya Vanichkina
▴ 130
14 results • Page
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Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2
by
ATpoint
★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness
by
ATpoint
★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness
by
Gordon Smyth
52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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