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GOexpress
•
reset
0
votes
2
replies
2.3k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
2.1 years ago
Chruut
• 0
2
votes
8
replies
1.4k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 2.1 years ago by
kevin.rue
▴ 350 • written 2.1 years ago by
grolo
• 0
0
votes
0
replies
556
views
GOexpress pvalue and gene sets
GOexpress
2.8 years ago
jms2520
▴ 10
0
votes
4
replies
1.3k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 4.9 years ago by
kevin.rue
▴ 350 • written 4.9 years ago by
atorson
• 0
1
vote
2
replies
1.5k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 5.2 years ago by
kevin.rue
▴ 350 • written 5.2 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.2k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
5.3 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.5k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
6.9 years ago
sina.zboron
• 0
9
votes
8
replies
4.5k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
7.8 years ago
Bogdan
▴ 670
5
votes
4
replies
1.8k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 7.9 years ago by
kevin.rue
▴ 350 • written 7.9 years ago by
mforde84
▴ 20
0
votes
3
replies
4.1k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 8.6 years ago by
kevin.rue
▴ 350 • written 8.6 years ago by
Darya Vanichkina
▴ 130
2
votes
6
replies
2.9k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 8.8 years ago by
kevin.rue
▴ 350 • written 8.8 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.5k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 9.2 years ago by
kevin.rue
▴ 350 • written 9.2 years ago by
willj
▴ 30
3
votes
6
replies
2.0k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 9.2 years ago by
kevin.rue
▴ 350 • written 9.2 years ago by
kcamnairb
▴ 10
6
votes
7
replies
4.1k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
9.2 years ago
martin.hoelzer
▴ 20
14 results • Page
1 of 1
Recent ...
Replies
Comment: Help using rtracklayer for gene ID extraction
by
James W. MacDonald
67k
Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …
Answer: Need new version : tx2gene.gencode.v47.csv
by
Guido Hooiveld
★ 4.1k
Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …
Comment: Help using rtracklayer for gene ID extraction
by
Aichatou
• 0
Hello, Please disregard the previous post. it's working now, i think. I am able to create the txdb object but I can't see all the other inf…
Comment: p value is 0, padj is 0
by
Wirayatida
• 0
Than you so much. My counts are 47,37 and 72 for mock. The treatment is 8153, 6723 and 8024.
Votes
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
Answer: Mapping Between GenBank ID's and Uniprot
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