Showing : gosim • reset
3
votes
3
replies
825
views
compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 5.5 years ago by ▴ 730 • written 5.5 years ago by ▴ 10
1
vote
1
reply
644
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 14 months ago by ▴ 730 • written 15 months ago by ▴ 10
0
votes
0
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1.2k
views
Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
12.7 years ago Olivier Lucas ▴ 40
0
votes
2
replies
1.3k
views
Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 12.7 years ago by ▴ 40 • written 12.7 years ago by ★ 7.2k
0
votes
2
replies
2.0k
views
GOSim yeast
GO Yeast GOSim GO Yeast GOSim
updated 7.1 years ago by • 0 • written 12.0 years ago by ★ 13k
0
votes
1
reply
1.2k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 20
0
votes
0
replies
992
views
GOSim Problem
Yeast Organism GOSim Yeast Organism GOSim
11.6 years ago Pablo Andretta Jaskowiak ▴ 10
0
votes
1
reply
1.4k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.1 years ago by ▴ 730 • written 8.6 years ago by ▴ 10
0
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1
reply
683
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 19 months ago by ▴ 780 • written 19 months ago by • 0
0
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0
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834
views
Problem while working with GOSim package
GOSim GOSim
11.7 years ago ANIRBAN BHAR ▴ 60
0
votes
3
replies
1.2k
views
Query Gene Ontology
GOSim GOSim
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 10
11 results • Page 1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Votes
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
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