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gsa
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0
votes
4
replies
1.7k
views
Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
9.0 years ago
Aileen Bahl
▴ 10
0
votes
5
replies
1.6k
views
gene set (enrichment) analysis
gsea
gsa
updated 8.1 years ago by
Axel Klenk
★ 1.0k • written 8.1 years ago by
Bogdan
▴ 670
1
vote
1
reply
1.4k
views
Illumina Infinium Global Screening Array (GSA) v1.0 for CRLMM
crlmm
gsa
microarray
illumina
written 6.0 years ago by
shaun
• 0
0
votes
2
replies
1.6k
views
gene set enrichment analysis
GSEA
GSA
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
Bogdan
▴ 670
0
votes
7
replies
2.0k
views
Statistic for GSA
gsea
concept
gsa
updated 7.2 years ago by
Pekka Kohonen
▴ 190 • written 7.2 years ago by
Lluís Revilla Sancho
▴ 730
0
votes
1
reply
599
views
GSA type of input data
GSEA
GSA
vst
updated 16 months ago by
Michael Love
41k • written 16 months ago by
nhaus
▴ 30
1
vote
3
replies
1.4k
views
GSA error with any ExpressionSets
GSA
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
epercamh
• 0
0
votes
0
replies
743
views
GSA for comparison of geneset enricment analysis between multiple class
GSA
6.2 years ago
Seymoo
• 0
8 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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Rory Stark
★ 5.2k
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tangming2005
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junhui.li11
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James W. MacDonald
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