Showing : gseGO • reset
2
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2
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1.5k
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Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 22 months ago by ▴ 10
2
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4
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# Invalid keytype: GOALL. Please use the keytypes method to see a listing of valid arguments.
clusterProfiler makeOrgPackage gseGO
updated 16 months ago by 68k • written 17 months ago by • 0
0
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1
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2.3k
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How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO GeneSet clusterProfiler GeneSetEnrichment
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
4
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15
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6.8k
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All genes in a set for gseGO funtion
gseGO setSize
updated 3.3 years ago by 68k • written 3.3 years ago by ▴ 10
2
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2
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5.9k
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How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2 clusterprofiler visualization gseGo
8.8 years ago • updated 5.2 years ago tcalvo ▴ 100
0
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1
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1.4k
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How to change the siez of lables in heatmap
software error go dose heatplot gseGo
7.0 years ago aboumarshal • 0
0
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1
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2.0k
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Remove highly similar terms from a GO gene set enrichment analysis
clusterProfiler gseGO gene ontology go semantic similarity gene set enrichment analysis
7.6 years ago jan.soderman • 0
0
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2.9k
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clusterProlifer: plotGOgraph() error with gseGO() result
clusterprofiler gseGO plotGOgraph() topGO
updated 8.9 years ago by ★ 1.2k • written 8.9 years ago by • 0
8 results • Page 1 of 1
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
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A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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